NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029826

3300029826: Marine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247



Overview

Basic Information
IMG/M Taxon OID3300029826 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121308 | Gp0151791 | Ga0134619
Sample NameMarine sediment microbial communities from Jimmy Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - N0247
Sequencing StatusPermanent Draft
Sequencing CenterBattelle Memorial Institute
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size299701242
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From New Orleans, Usa To Study Impact Of Deep Water Horizon Explosion

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Bay Jimmy
CoordinatesLat. (o)29.44Long. (o)-89.903Alt. (m)N/ADepth (m).02 to .04
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005815Metagenome / Metatranscriptome389Y
F010017Metagenome / Metatranscriptome309Y
F024682Metagenome / Metatranscriptome205Y
F025315Metagenome202Y
F025653Metagenome / Metatranscriptome200Y
F025922Metagenome / Metatranscriptome199Y
F026597Metagenome197Y
F029285Metagenome / Metatranscriptome189Y
F039402Metagenome / Metatranscriptome164Y
F044014Metagenome155Y
F059979Metagenome / Metatranscriptome133Y
F075038Metagenome / Metatranscriptome119Y
F088355Metagenome / Metatranscriptome109Y
F089490Metagenome / Metatranscriptome109Y
F092304Metagenome107Y
F101126Metagenome / Metatranscriptome102Y
F102142Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134619_1000066Not Available48186Open in IMG/M
Ga0134619_1001019All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium9470Open in IMG/M
Ga0134619_1001612All Organisms → cellular organisms → Bacteria → Proteobacteria6850Open in IMG/M
Ga0134619_1007928All Organisms → cellular organisms → Bacteria2588Open in IMG/M
Ga0134619_1015853All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1749Open in IMG/M
Ga0134619_1034565Not Available1132Open in IMG/M
Ga0134619_1035275All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1119Open in IMG/M
Ga0134619_1038277All Organisms → cellular organisms → Archaea1070Open in IMG/M
Ga0134619_1068148All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria774Open in IMG/M
Ga0134619_1068177Not Available774Open in IMG/M
Ga0134619_1070430Not Available760Open in IMG/M
Ga0134619_1075212Not Available733Open in IMG/M
Ga0134619_1084015All Organisms → cellular organisms → Bacteria → Terrabacteria group690Open in IMG/M
Ga0134619_1121473All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria567Open in IMG/M
Ga0134619_1122432Not Available565Open in IMG/M
Ga0134619_1140272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134619_1000066Ga0134619_100006656F039402MSLTDYSDLEGQIKDAPEPKTLPRGAEVKARIISVRDGVSDKNGAQWYSVVFDVPSDPMVIEFNDFFWDLADRDKLTEKEFQRSLRKFKLFAEAIGLDYSRPFSWADDLVGMECWVILGVKKSDEYGDQNTVSKYITGK
Ga0134619_1000066Ga0134619_100006669F044014MSDEYKPRFIFEITEAQKERADRLLATYGLRKAVFSHILDDVLDILEEFGGASLGLLITGKCKPRDIIPTMKNASRGGELSNG
Ga0134619_1001019Ga0134619_100101912F101126MARFIVDLWLDGYDTEEEMIEACEEFIYEQLNFTASSVKIERVEE
Ga0134619_1001612Ga0134619_10016129F029285MKNQADYSRYDCPFSHIEKECGHKLMGPEGYKNAYGVWCQCGFRGPAFCLDPEELKLKKKQEKRSATMDFYKRAGR
Ga0134619_1007928Ga0134619_10079284F026597MNLFERNRFLVSVSLAFLIVVLIGVTISSFSPSKKSEYFQELKNIYNTVSNYDKEINNWEIAKNTVVDLNYWYDFIPRYDAISDEDKDVLLMQNEVRDLAIKQQIRSLPEIRKYYGEYLGNKLESRGYKVTILNDERNKIIVFTHDSFMKRKALEDFHVTVVNDLRTLGFKQIRYKWFELEKLKEERYIHYNFKDLNDNEYRRFNISALRD
Ga0134619_1015853Ga0134619_10158532F010017NCMNHRKHKQAQNLKKKVYTPEGYIKDPPDAVCPHCGKKQKPCSYVNSLSRAWSRDACKKKYPQIFLVDMNLRM
Ga0134619_1034565Ga0134619_10345652F075038MSKTWELQKGNILVVEDANTASLVIVVKDLKKKEDKIVALEEIIQKMRND
Ga0134619_1035275Ga0134619_10352752F024682LNAEDELISKLKKEIGKTLPAMFAGMAESMLENNKDVIIAWLKENKDLVKQVIES
Ga0134619_1038277Ga0134619_10382772F092304MLKEEYVRQQLECEVRESLEHKIALRREAPLIGLVAFSVALWGSKLFTAVSPGSSVVFQLWGFNVHLHHFNYGFVLLVVGLLLTFFEGPWFVRVQHSLFGVGLGFIVDEYWLLLIFDDHASTYFGPESQYISTMIGLFITIIYAVIAIGVFFKTRRERKIWRQLYEAVKSGKIEFLLKP
Ga0134619_1068148Ga0134619_10681482F005815MTMNTTRLITYWNAGEAATVIDFLDAIRDVLWETYGEQITQMHREACEESSRDENQCKFEFDDDITF
Ga0134619_1068177Ga0134619_10681772F025653MSDPIKYFETQLKNLCLAELQAYKKRLDESITQKIAQTAPNEQIAPLILYRGIVEHEMKTRMGQK
Ga0134619_1070430Ga0134619_10704301F102142GILAVVITVIPFEQFVAQFAGLSYDEFRGGMPTLYLLPLFLIYAAIGLVLARMKQNLNIGRRGAFLIIFAFHYIIVSFLGNIEGLIYLPDFTFLSAMTSGLILAGAVVGLIFYLWKQDENPDAKPGEQIKSHFSSRSVLSWVWRFFLVWISFYIVTMIIGIVAMPFNGSYLDDPMNTLGMVVPSMGTLFVITQLRSLIYVLVILPFIIFWNSSKRASFLYVALILIIQYPLLGDGLAYFWPAMYRLVDGIVL
Ga0134619_1075212Ga0134619_10752122F089490MYHLMKSQKFTLDHLVSGLMSSYRQTEIGRFQRFSAALGACEVANKKGRSRYYVLNESGQEYYSGTWID
Ga0134619_1084015Ga0134619_10840151F025315MQSYPVYTYEILLVLVMPLLILYLKGNWPLRKVIPPLVVIPILWYFTYAPLHELSHAAGAYLVGGKVIAWKLIPRFXXXXGEFARAWLTPSRITQRWQILTMDTFPYLLDVVCFIVAIFVFRQVSFNKNPFGIGLAFMLLCLRPAMDFVFEPIAFLSGFRGDLYNIQQIVGPFAIWSFILISIGLAIYSISSTLSRLVGFSKQ
Ga0134619_1121473Ga0134619_11214732F059979MKSFLFIVAQLTLVTLVYAFAYRAGYRSAQSKAISVVKKFADPVTCLLDSLNASIDEAA
Ga0134619_1122432Ga0134619_11224321F025922DMARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIVDVVDDVPAVAVTLNTNDFGDVKTLATLAQVAPAKAAMNASATSTTGNLVVVSGTQLVETSTYLHGVALADFSVVCGNLTGVTLWAPVQEECSLGTLANNIDQTLFMDEVYVNSLEFGYTTGANATENYGAETDNKMWLLND
Ga0134619_1140272Ga0134619_11402722F088355MKNLTNKISTFVGQKGQLLLVILSIALFVLAAGAPNDTIGIGR
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Biomedical Sciences Research Center "Alexander Fleming"
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