Sample 3300029667

Basic Information
IMG/M Taxon OID	3300029667 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321341 \| Ga0307354
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	57202241
Sequencing Scaffolds	33
Novel Protein Genes	37
Associated Families	35

Dataset Contents

Total Genome Size

57202241

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004383	Metagenome / Metatranscriptome	440	Y
F005744	Metagenome / Metatranscriptome	391	Y
F009968	Metagenome / Metatranscriptome	310	Y
F020914	Metagenome / Metatranscriptome	221	N
F025291	Metagenome / Metatranscriptome	202	N
F028541	Metagenome / Metatranscriptome	191	Y
F031111	Metagenome / Metatranscriptome	183	N
F033857	Metagenome / Metatranscriptome	176	Y
F035785	Metagenome / Metatranscriptome	171	Y
F036251	Metagenome / Metatranscriptome	170	Y
F040648	Metagenome / Metatranscriptome	161	Y
F042353	Metagenome / Metatranscriptome	158	Y
F056712	Metagenome / Metatranscriptome	137	N
F062800	Metagenome / Metatranscriptome	130	N
F064748	Metagenome / Metatranscriptome	128	Y
F067770	Metagenome / Metatranscriptome	125	N
F068879	Metagenome / Metatranscriptome	124	N
F070165	Metagenome / Metatranscriptome	123	N
F071368	Metagenome / Metatranscriptome	122	N
F072475	Metagenome / Metatranscriptome	121	N
F080199	Metagenome / Metatranscriptome	115	N
F082734	Metagenome / Metatranscriptome	113	N
F084407	Metagenome / Metatranscriptome	112	N
F085741	Metagenome / Metatranscriptome	111	Y
F088942	Metagenome / Metatranscriptome	109	Y
F088950	Metagenome / Metatranscriptome	109	N
F092121	Metagenome / Metatranscriptome	107	N
F092294	Metagenome / Metatranscriptome	107	N
F093911	Metagenome / Metatranscriptome	106	N
F094051	Metagenome / Metatranscriptome	106	N
F097409	Metagenome / Metatranscriptome	104	Y
F097599	Metagenome / Metatranscriptome	104	N
F101223	Metagenome / Metatranscriptome	102	N
F103495	Metagenome / Metatranscriptome	101	N
F103500	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307354_100813	Not Available	4000	Open in IMG/M
Ga0307354_101160	All Organisms → Viruses → Predicted Viral	3376	Open in IMG/M
Ga0307354_101393	All Organisms → cellular organisms → Archaea	3128	Open in IMG/M
Ga0307354_103055	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	2127	Open in IMG/M
Ga0307354_103258	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
Ga0307354_107466	All Organisms → cellular organisms → Archaea → Euryarchaeota	1333	Open in IMG/M
Ga0307354_108564	Not Available	1232	Open in IMG/M
Ga0307354_110782	Not Available	1073	Open in IMG/M
Ga0307354_111724	Not Available	1022	Open in IMG/M
Ga0307354_114040	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	917	Open in IMG/M
Ga0307354_114491	Not Available	901	Open in IMG/M
Ga0307354_116134	Not Available	841	Open in IMG/M
Ga0307354_117730	Not Available	791	Open in IMG/M
Ga0307354_118289	Not Available	776	Open in IMG/M
Ga0307354_119452	Not Available	745	Open in IMG/M
Ga0307354_121145	Not Available	705	Open in IMG/M
Ga0307354_121897	Not Available	689	Open in IMG/M
Ga0307354_122935	Not Available	669	Open in IMG/M
Ga0307354_123014	Not Available	667	Open in IMG/M
Ga0307354_123725	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
Ga0307354_124005	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC	649	Open in IMG/M
Ga0307354_124879	Not Available	634	Open in IMG/M
Ga0307354_125689	Not Available	621	Open in IMG/M
Ga0307354_125883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	618	Open in IMG/M
Ga0307354_126608	Not Available	608	Open in IMG/M
Ga0307354_127851	Not Available	590	Open in IMG/M
Ga0307354_127920	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	590	Open in IMG/M
Ga0307354_131516	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	546	Open in IMG/M
Ga0307354_133366	Not Available	527	Open in IMG/M
Ga0307354_134517	Not Available	515	Open in IMG/M
Ga0307354_134682	Not Available	513	Open in IMG/M
Ga0307354_135616	Not Available	505	Open in IMG/M
Ga0307354_136065	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307354_100813	Ga0307354_1008139	F084407	LLYPYALDEFKGDDPGCSKTGAERALAYLMAHYLAGGEDQIGFSGEKIDDYSYTVAGPAATSSRWYVLYRQQLDRCRDALAIGPAALAGVQHADVSGLSDLHLDQNPVVRVRGDSDESP
Ga0307354_101160	Ga0307354_1011604	F103495	MIYMDNLLQFLIDSGLLYMIISTLLTVGIGFIVGKGVSFKEIQDIIKVVDESYKDGYISPEEAQKIYEEITDVIGQDWYIRLFKLFKR
Ga0307354_101393	Ga0307354_1013933	F080199	MKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKESMKYAIISQNSYVPYNTFLVFGTEKFKPIANEPRYKYPDSDRGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL
Ga0307354_103055	Ga0307354_1030551	F093911	RVLGDFMRLYDAYKNGEITRTEYLAYLDFGYKPSDSVFLTQNRSTEMVTISYLSMGNNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI
Ga0307354_103258	Ga0307354_1032583	F071368	MDNLPHPVTTTDVYLARIVQQNDEIIALLNQQRPAPKPCRLKEPKP
Ga0307354_107466	Ga0307354_1074661	F094051	MANTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSG
Ga0307354_108564	Ga0307354_1085642	F101223	MTEVTQEDLETLKSELNEIIKTRLDSFIDEFVATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMIGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSSIKRNTIDYAIKQAEEAHAKAKAVKAENSKIPIDANHISYG
Ga0307354_110782	Ga0307354_1107822	F033857	MVEIIDLSTLSPKPVVVRIGNGNEIEEIDLTIVPARATLLLSEATQRHGGWDKIPDDEMVPAIAAICQQSNPKITAEWLGTKLTRPQLAGLTQVILAQAFRPWGNQKKDGKEQDAGEKNR
Ga0307354_111724	Ga0307354_1117243	F088942	LIGGSVEMKWFRRDNTEGYSDETLKVMNEEMQKLYNSLSDEEKGNESYIDYLKEQILSSH
Ga0307354_112118	Ga0307354_1121181	F097599	YPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAPVQHANMTEFENLKKELDAEKAKTAELVNLKQEIATLKAEKATAEKDAKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQKAEGAGVAGGSGDAESTEEQKFANMAAEVAKATGIQFV
Ga0307354_114040	Ga0307354_1140402	F072475	MSDSFASRFMTPEEKQAMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESISKHHTDADARRKQALMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEY
Ga0307354_114491	Ga0307354_1144911	F062800	AVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVSLASTASATIRVHYHIEWFDLQYAV
Ga0307354_116134	Ga0307354_1161343	F005744	MDETFEIIKAGAPDGPPEQALYRIQQTYPDGSGSRLNVDWTGLHRLHDLIHDRIAMEGCVCETCDTKGCHRPATWEIECRGAGVSGRLIYACDEHAPDEAILSPQDEIRRCA
Ga0307354_117730	Ga0307354_1177301	F025291	QRRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMAVVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307354_118289	Ga0307354_1182891	F062800	RPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307354_119452	Ga0307354_1194522	F004383	LHAGRYPEGAREYAREWVGMTDILERAFMARIRADEHREALAALQREFDERPDVIEIKRLIDRCEEERRTCIEQAKAAGISKQGSFLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAEALLGKAALDDCCEVEVKEIGVSVEYVRLEGSE
Ga0307354_121145	Ga0307354_1211452	F088950	GVLKELADFIEDKVPELDNKVTTIYPESKRFAPPTVVIDIVAGRETLIIDGTKTHELVRVAIISDKKSEINRIFKLITDAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSAMKRELDIVVIEFRKRR
Ga0307354_121897	Ga0307354_1218971	F035785	RIEAENALKMTETEMLDVVFEASENSVVELNVVDPDSQAGDNDGVYLEIIKLDDEESVVRDRWPNLDGTRHIVSTSDIYAIYRALVDQVEEVA
Ga0307354_122935	Ga0307354_1229351	F068879	SVYVIGAPWRDNWVTKEEGFVAGATACPGCRRGLPPGVTVFANARINF
Ga0307354_123014	Ga0307354_1230142	F009968	VNTCLGCRSHYRERHWWLFEIDFCGLDGDVVGFECPIGCIDTEGCPAYERRPAWPEGAIA
Ga0307354_123725	Ga0307354_1237252	F056712	AAGLVGILEGLEKSLVRRLMKSSGKQPFLIVFLILFLSMNKKGKKKIEPEKDENYWRVIGGL
Ga0307354_124005	Ga0307354_1240051	F092121	MPKHFYTLLIIPHKKKDSVKKFLATPRHFRLATTLLVALFCFLGYCAVDYLTIKLEQMELFNLRRLTSTQQEQIDTLEGKITFFERKLAELKQVDEKIRTMAMDLAGKPRKASRKETAPAREQALGVGGPMPAGETGADKL
Ga0307354_124879	Ga0307354_1248791	F082734	SYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLK
Ga0307354_125689	Ga0307354_1256891	F040648	ENLVVRHNVDVLLATAREGVTALETASTLIHIPTRDMAKIQTAINKMREAAVYIETRAYNTPVKSSGTTKSALKEALKNASQEQIERAYAILSGQEAVEAVPAEGGEE
Ga0307354_125689	Ga0307354_1256892	F036251	MSAKERQTVLFGDTGVTTPIDTTDRVRLTDGMVFVAQKIEVRPSNAYGEYVVFDGEDLDGKDFHAYSTSSVILQQAKALLEKYGGEKGALTHDVLCAVK
Ga0307354_125883	Ga0307354_1258831	F028541	REQQGAFMNERERLKLINRLKTARTSEERDEILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGMFLVVGVVLFAKSRRAQRKAAEET
Ga0307354_126608	Ga0307354_1266081	F070165	QTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV
Ga0307354_127851	Ga0307354_1278512	F031111	MKNQVLFSIFKNKTRRKKEKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFCCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL
Ga0307354_127920	Ga0307354_1279201	F092294	EKSNAFANLHDVTLQRLDVYHRNNGGYVFYDSKHFAPTVDHWNTVPVIYVETEPGKPAEHPQFKDVITRTLPAKFRTVGSVSAAHLTETGEKVLKGAIVFSDPAIAAKANAGELSLSTGLASPEAPDPRLPGATRIAGPVTPNHVLVFDRGACPNCYPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAP
Ga0307354_131516	Ga0307354_1315161	F085741	ESFDYGQVGFFARVSSAGTGNLSAMFDYFEVTDSMIYENVGYPFTVLAGTTHGGSIGSQTITIFDGIIGEDIDVGRYNLIVQTISTSAASELEFSFVNLTDDTTLAIDTSAKSVTIGGDTVLTSYNHVIEFKESDIGDNAVITINKTISGYYPLNLITYAALIPVSNTEGSEIITPTNLS
Ga0307354_131609	Ga0307354_1316091	F020914	MAIYQKYGFAIDQILSENQALPNATSEDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRLTIGATDGTVTTVLPSILIKEGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTS
Ga0307354_133366	Ga0307354_1333661	F042353	TLTGDTCRRLERIIRDDLEHATVSSAMVLVEEGGRIVINELVLRLEDGRMVTLMPLDVSAETAVDLRLDIYDDHLPGGHGWREATVAEDYAEDLAESTAPPRSPEPDTLEEARL
Ga0307354_134517	Ga0307354_1345171	F064748	ADCIAAGCKGKVWGQCHFDPLLNLLSSGAEYFAEILTENVIRDTVFRVEKDGAYSKGGLYPLFSDNGKLWMESGHLKNHFKQRTAYNCETHTPIYLYQEYPEDAEVVEYALVEVKRTPVRKFVEGDV
Ga0307354_134682	Ga0307354_1346821	F070165	MGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDYRYEPAVIEVV
Ga0307354_135616	Ga0307354_1356161	F067770	MSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGGRYLERIAKLQTVKNK
Ga0307354_135652	Ga0307354_1356521	F103500	RLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Ga0307354_136065	Ga0307354_1360652	F097409	MNLREAQTQISVLIGKRAEAINVLHRLEKVEDRYNPKIIAEINGYKQAVEELSRELDRLEVEKGALLEAEEAARKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029667: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences