| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029638 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0297571 | Ga0257144 |
| Sample Name | Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_80m (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 107744556 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 7 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | N/A | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004178 | Metagenome / Metatranscriptome | 449 | Y |
| F022812 | Metagenome / Metatranscriptome | 212 | Y |
| F026446 | Metagenome / Metatranscriptome | 198 | Y |
| F046170 | Metagenome / Metatranscriptome | 151 | Y |
| F071959 | Metagenome / Metatranscriptome | 121 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0257144_1003241 | Not Available | 2596 | Open in IMG/M |
| Ga0257144_1005228 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2081 | Open in IMG/M |
| Ga0257144_1008202 | Not Available | 1688 | Open in IMG/M |
| Ga0257144_1013816 | Not Available | 1284 | Open in IMG/M |
| Ga0257144_1030592 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 808 | Open in IMG/M |
| Ga0257144_1031885 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 788 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0257144_1003241 | Ga0257144_10032414 | F026446 | MKVTGETFSFIQKEKKSRRGKIPKVFKLSGKRTVTGQNSGELYTKKHRRG |
| Ga0257144_1005228 | Ga0257144_10052281 | F026446 | NRRDFFFSKKEKRSRRGKIPKVLKLSGKRTVTGQNSGELYTKKHRRGNS |
| Ga0257144_1008202 | Ga0257144_10082023 | F046170 | MIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKVSTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTMAW |
| Ga0257144_1013816 | Ga0257144_10138162 | F071959 | MASRNYLINSNDMTLTDKKEYRTKALAAGLERCGQKNIGNVNADIPVLAGIPPANMEARVAEIKAHIETGKWPKTIDQRELALLTDFVAAAAQDFWLTVALAAVGTVYTCLGLLPAYTFPAGRLMVCYGVSVDAAVLPVSRLIFRRGSAVGNIQAQFDMQPLGPRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDNFLFEIAGAVIA |
| Ga0257144_1013816 | Ga0257144_10138163 | F046170 | FGEIAYGGAVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYNLTKAMGSSSKRGSGAESRAVQEAQKILQERMSAKALTQGRTAERSYQREFESVAPHAF |
| Ga0257144_1030592 | Ga0257144_10305921 | F004178 | MRPTAPHAAESSVGKHTARESEAPNVCEWERARGERPP |
| Ga0257144_1031885 | Ga0257144_10318851 | F022812 | MSKLAFRPQTVDIAYLPLRQDFLAKNVLMTAQRDYGLGNSFFLSMAGLTPN |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |