| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029637 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0297558 | Ga0257131 |
| Sample Name | Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 18193971 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales | 1 |
| Not Available | 12 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Canada: Northeast Subartic Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | N/A | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003253 | Metagenome / Metatranscriptome | 497 | Y |
| F003424 | Metagenome / Metatranscriptome | 487 | Y |
| F003868 | Metagenome / Metatranscriptome | 464 | Y |
| F006989 | Metagenome / Metatranscriptome | 360 | Y |
| F008174 | Metagenome / Metatranscriptome | 337 | Y |
| F021393 | Metagenome / Metatranscriptome | 219 | N |
| F027652 | Metagenome / Metatranscriptome | 194 | N |
| F030135 | Metagenome / Metatranscriptome | 186 | Y |
| F042932 | Metagenome / Metatranscriptome | 157 | N |
| F043073 | Metagenome / Metatranscriptome | 157 | N |
| F050422 | Metagenome / Metatranscriptome | 145 | Y |
| F054104 | Metagenome / Metatranscriptome | 140 | Y |
| F055787 | Metagenome / Metatranscriptome | 138 | Y |
| F056641 | Metagenome / Metatranscriptome | 137 | Y |
| F063612 | Metatranscriptome | 129 | Y |
| F067833 | Metagenome / Metatranscriptome | 125 | Y |
| F078814 | Metagenome / Metatranscriptome | 116 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0257131_100004 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales | 8667 | Open in IMG/M |
| Ga0257131_102048 | Not Available | 998 | Open in IMG/M |
| Ga0257131_102630 | Not Available | 912 | Open in IMG/M |
| Ga0257131_102939 | Not Available | 876 | Open in IMG/M |
| Ga0257131_103207 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M | 848 | Open in IMG/M |
| Ga0257131_104648 | Not Available | 724 | Open in IMG/M |
| Ga0257131_104981 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 704 | Open in IMG/M |
| Ga0257131_105130 | Not Available | 696 | Open in IMG/M |
| Ga0257131_105779 | Not Available | 661 | Open in IMG/M |
| Ga0257131_106220 | Not Available | 640 | Open in IMG/M |
| Ga0257131_106415 | Not Available | 632 | Open in IMG/M |
| Ga0257131_108174 | Not Available | 569 | Open in IMG/M |
| Ga0257131_108253 | Not Available | 567 | Open in IMG/M |
| Ga0257131_110319 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium | 517 | Open in IMG/M |
| Ga0257131_110639 | Not Available | 510 | Open in IMG/M |
| Ga0257131_111080 | Not Available | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0257131_100004 | Ga0257131_1000047 | F027652 | SAEAILKRKKPLLEEMVSKVHDHERKNMDVYVLHDSTLPRDRVIIFRHDKSGEYNNVSSPEIDGLRKKIQHCKEEIIKLQEQIYPRGTDDGLSPEEKYDRIHPKGYYKNEAATRRPAKEEHDINTTEFSVWDKPDTRTPFQKGDEPVLSDLQKAGIYVYPIYNRPVKWKTPTDVETPPERIHVTYCDHIENTEETSESDEGSEN |
| Ga0257131_102048 | Ga0257131_1020481 | F021393 | TQRVETEKSFQETVKSGFDTLTDVVQSIAESQKTTQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPRDPYPQGTQAGLDDDRSGEDKPISDKGGLKMQKKSGDDTELIEKAEHTFSTDTPRPNASIETVDKSIKDSSLILKDARAEGFEGLSTVARNILNGKYYVPSDDEVRGF |
| Ga0257131_102630 | Ga0257131_1026302 | F055787 | ELTSIQKSEHTFSTETPRPSAALETVDKSTGDFSPILKDARSQGFEGLSQVARDILNGKYYKPTPEEVGQW |
| Ga0257131_102939 | Ga0257131_1029391 | F063612 | APKSVAGGSPADDAALVAEESGLKIPRREAASEEDVYSPAL |
| Ga0257131_103207 | Ga0257131_1032073 | F050422 | MVKLLGFEITRKDNDLEKPAEAKQAFTIPSPDDGTTTISA |
| Ga0257131_104648 | Ga0257131_1046481 | F030135 | REELATLSSFTNIWHSTFAGCQFPDAILPGKEAIDLVAGPLN |
| Ga0257131_104981 | Ga0257131_1049811 | F043073 | VVNMWASLTSSQKVILVSNLMGLYYAVMLLGDKIGLPTESFGAKFYGLKKASVVQASGASWTGVFLCTILADAFYVCFKCSEGARLRYCNAGLIMACQRLTLQIAHSTQSIRTVAIPVVAKEYTAGLIASFVFIGLFSSVSSTSRLPAGSVWYKPATTTAKCLFGMTLGCLAFFLQMITTDFLAAVSNVKGKRTAVEYAQLDWCAVMLMGLILGLLFAQMYLTENEQIGFAKVR |
| Ga0257131_105095 | Ga0257131_1050952 | F054104 | VTNKYNLVKSGLLETFTTTENLITNFEKKAFLSLQRYIIFVTASRILRKFLFLSEQEQSKLIEVTIAKLGGV |
| Ga0257131_105130 | Ga0257131_1051301 | F003253 | LTTLSPTAFQARKAEAVRNEVMIKEISLSEFNVIDNTHIEVDGVKIELTPFAFKRLLGRLRIPTAFAKRFESGFGSDGLKQLVQMMKTMKSSKNDQTVTLLVDPRAKKVTNILPAGYASISNEAFIDFAEGYINQYGLEVKDFGSDPSGGATINCVSPNSVFSVPGMSDEVFNTGVTFRNTPTRGLEVSPYLNRLVCSNGMSSTSFSQTYGLHELTDKSIREFNDHMISMA |
| Ga0257131_105779 | Ga0257131_1057791 | F003868 | KIIMKKIILAILMTFGIFTIVSAEIGLKVGVSAQIGSMETSGKEVSSAGTTETSKTEEALFGTAGFFIEKDLAFLPGPFGILSIGYDNIVHDLDLGTQSNTRVHESLGAGGAIRSTRNHTVEAAVTGFETLYATLNITDWLYVKGGSVTVDLDTKFTGTETSSYAKGHSLDGTVLGFGVEKSSDNGMFFRLEYNDYLIDGKSVTNNGTDSKFTATLNDVD |
| Ga0257131_106220 | Ga0257131_1062201 | F003424 | NQSVFGGTAKQDGYNAAGTAIAQTDKEHGVFTESFGSQFVELGIGRWISLGFEHVPDSISTPQNINEAGSTGVHTPNTITSTVSVDFNDMNTTYLKLNTPMGIYFKYGTVSTDLDIKETQLSGNTYKNTSIDGTSMGAGYQKTLGERGFGFRIEGNYVELDNVTVNNGVAKTAGTVLNHFKEIKATNLEGLTGKVALTYTFGRSGNSF |
| Ga0257131_106415 | Ga0257131_1064152 | F078814 | VKDVFTLLGNTKGEIITKVDSIIKQVAKKRSVKVSSIEDYFDNEILK |
| Ga0257131_108174 | Ga0257131_1081741 | F006989 | LSTFVKKLLPIDKFIFMKIGKEGTVSSVYFPERDAVKLVSTPTTDIFDTDITDPVKVSFYNGTKVIDALSHFNGDVQGKIKYSEIDGELMASDFTLANDDLQINLACADPSLSFMEMSKEETDRAFXTDGNIFQFDLLTTHVDKMKSLFNLEREEDTFTLAVTDKGVAVQGLSYDATLAHSYEGENAVG |
| Ga0257131_108253 | Ga0257131_1082531 | F008174 | MNIAPNLMTHRARGCPFIANVDGEDFVIDGFAKYKGYGDECKTIYFAGVALFQDEENKENGNLVFPFCFEYSYDTDEYKCYRKHFSDEIVENDFAYFIVENYEQSCRNVKEVLKR |
| Ga0257131_110319 | Ga0257131_1103193 | F067833 | HHVKTKVYGIVAMANVFQHHMYVMAQVNSVTQVGVLTVPMAQMKA |
| Ga0257131_110639 | Ga0257131_1106391 | F042932 | EQIVDQEITKSDEEEQSSYENTVAKSIDTLADVVQSIAQSQQGVEKAVSEIVERVKALETPSDLPLSPKGTQGGDDVGAKVTIPNDPYPVGDQVGLDSDRKNSNPPKKDPAVLKMQEKPVNKAEEDHEPEMIQKSEHEFSTETPRPGSAPETVDKSFTKDFSPILKDAR |
| Ga0257131_111080 | Ga0257131_1110801 | F056641 | MLSIAAIGSLSNTAEVSSTNLRAGAAFDNLKAIWNQALKLGDFSTSMKANYDYNANKDFIKDVEFTGDLVEGGADDVSVSYKVTHDFGSKNTNVELTANTQGTTLSAEYDQADGLKEVSAEREVKLGDQNVDTTASWLVKAQTARVKLMSKLGSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |