NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029597

3300029597: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Leu1 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300029597 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0321355 | Ga0307368
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Leu1 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size39936185
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4
All Organisms → cellular organisms → Bacteria1
Not Available5
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048337Metagenome / Metatranscriptome148N
F065806Metagenome / Metatranscriptome127N
F077341Metagenome / Metatranscriptome117N
F082739Metagenome / Metatranscriptome113N
F092888Metagenome / Metatranscriptome107Y
F097412Metagenome / Metatranscriptome104N
F105254Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307368_101108All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2920Open in IMG/M
Ga0307368_101842All Organisms → cellular organisms → Bacteria2350Open in IMG/M
Ga0307368_106631All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1223Open in IMG/M
Ga0307368_107453Not Available1139Open in IMG/M
Ga0307368_108465All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1056Open in IMG/M
Ga0307368_112905All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon800Open in IMG/M
Ga0307368_113573All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium771Open in IMG/M
Ga0307368_116392All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon675Open in IMG/M
Ga0307368_116961Not Available660Open in IMG/M
Ga0307368_118875Not Available610Open in IMG/M
Ga0307368_123402Not Available526Open in IMG/M
Ga0307368_124950Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307368_101108Ga0307368_1011087F048337MTLIEETVTFEGILRREEMPDTETARLQDYRIAAITKDATYTLVDALPYDFIVTNAFYRITEAFDGTLNLGTNAAPGRIIADADFVKTVGKRSTAKSIQIDAGKAIRLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307368_101842Ga0307368_1018421F048337NIRTASLFAINLPGNAVLCSKQARSTIMARKENNKMIEKQVTFEGILREDEEQSNETARLQDYRIAAITKDATYVLIDALPYDFIVANAFYRITEAFDGTINLGTGAAPGRIIADADFVKTVGKRSVAKSIQLDAGKPIKLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307368_106631Ga0307368_1066311F097412PNARRKKMSIYEEMNEDATSGGMYWKPKPGKINKVRILKDPIRREADQKINRPQYQFVVTGDDPKTPLVWGVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPQAPSKGA
Ga0307368_107453Ga0307368_1074531F065806VWMGNKQKIVSIGESESGGAARDRVYFYGGYTQDNAAEADGGTGKCLQFNPKSATYWIEQDFNVPVTSGVARTVSIKMKDDASFNGKVELELWYNGVLIVGPTTKTMTTSYAAQEMTAAAGDITADGVLALKVKVYGTAGCVYADTLTYS
Ga0307368_108465Ga0307368_1084651F048337NIRTASLFAINLPGNAVLCSKQARSTIMARKENNKMIEKQVTFEGILREEEEQSNDTARLQDYRVAAITKDATYVLIDALPYDFIVTNAFYRIKEAFDGTINLGTDVAPGRIIADADFVKTVGKKSTGKSLMLDAGKPILLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307368_112905Ga0307368_1129051F092888MPGPASARGNYGMQPRNNKAIPTTSEGSQVHEQGRLEQNQNLFTLRVRKASGTIEFLSIGVCFTVVSVILIQAMATGQTAWNHAAFEPASSLVLAAVGYAGFMTSWKETSIAVDGLARRFTATTRNLLTRSSHEHEVPLPGIQAMDTEVDERTNTVRVTISRDNRETIRFQLDCNSYGPLEKYLKALLPKIPIITRDATNYEAGMLPGHVSALY
Ga0307368_113573Ga0307368_1135732F048337MIEKQVTFEGILREEEEQSNETARLQDYRMAAITKDATYILVDALPYDFIVTNVFYRITEAFDGTIDLGTKVAPGRIIADADFVKTVAKRSVAKSIHLDAGKPIQLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307368_114258Ga0307368_1142581F105254MAEVATIYRLYGAGGTKYSLAGKTGRFCTQDSDPGLNNPCKVPPTGEVYYSYRVTDCIGITGDFNQVRDIYIHCDGNFASEWGLDAGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQAGGTPGTTGHSIDDSSNGHPYYKDETEKVRNFDTCLANSPLLIDSGPYTDDFYSKAWVLSLKIVPTATYGAKTPKSVIVTYNIF
Ga0307368_116392Ga0307368_1163921F082739GGYEIQGDTNMRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFAPVDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVMLATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTAPFVNEATVNGETANATVEFV
Ga0307368_116961Ga0307368_1169611F077341ELPHCYGKLGFQELKNTWRTKSGNLKVQHKGFIPIITITMWNLGIDGINASNMSSLIQMLNAAKTDGIMIYPRYEYGNDLGYLCILNSDISPEDFSQNVAAGQTLELSFIGKQKIDNMPTYTTLEGFYYMVDYWDNYLIDHNGNNLILKG
Ga0307368_118875Ga0307368_1188752F097412MSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKFNRPSYQFAVTGDDPKVPLVWSVSAKGALQQIIGIMKANGLTTLVGGVLQVAVAGDGTERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAQKGGLGDGASGKREF
Ga0307368_123402Ga0307368_1234021F097412HETQKPNARRKKMSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKTPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPQAPSKGA
Ga0307368_124950Ga0307368_1249501F065806NGIYLTTGSSCICWGYAHDESTWSNAGKVDDWMGNKQKIVSIGESESGGAARNRVYFYGGYTQDNTAEADGGSGKCIQFNPKSATYWIEQDFNVPVTASTARTVAIKMKDDADFNGNVYLELWYMGVCIVGPTEKTMTTNYVAQEMTATSGMITAEGVLTLKVKVYG
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