NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029579

3300029579: Human fecal microbial communities from Shanghai, China - P017V1



Overview

Basic Information
IMG/M Taxon OID3300029579 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133133 | Gp0283516 | Ga0244893
Sample NameHuman fecal microbial communities from Shanghai, China - P017V1
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size197186014
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F039198Metagenome164Y
F047755Metagenome149Y
F068941Metagenome124N
F073656Metagenome120N
F082887Metagenome / Metatranscriptome113Y
F088921Metagenome109N
F092227Metagenome107N
F097493Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244893_100049All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes202016Open in IMG/M
Ga0244893_100167All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales114605Open in IMG/M
Ga0244893_100459All Organisms → cellular organisms → Bacteria54772Open in IMG/M
Ga0244893_100668All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes40264Open in IMG/M
Ga0244893_103960All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6821Open in IMG/M
Ga0244893_107174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium3757Open in IMG/M
Ga0244893_109293All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes2885Open in IMG/M
Ga0244893_113219All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2044Open in IMG/M
Ga0244893_119559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1396Open in IMG/M
Ga0244893_129329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.934Open in IMG/M
Ga0244893_133433All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74815Open in IMG/M
Ga0244893_150939All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia547Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244893_100049Ga0244893_100049174F039198MQITNTEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILERIITKQVELNKNVC
Ga0244893_100167Ga0244893_100167100F047755MESEKVKHLIDMINEMDIKDKLRLAICMSQSQWYGLIYNTKENYEKFDTMLKEVDEEYRTTLIYFGQNKYFNINFVMAKLMEMEQADRNKIALYLFNSIKNQXYYI
Ga0244893_100459Ga0244893_10045976F082887MEKLKKIAKYATNILAIVSALVAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK
Ga0244893_100668Ga0244893_10066827F068941MKNNKGLIIGIIGLIIVMIGGTYAYYXXXXXXXXXSGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
Ga0244893_103960Ga0244893_1039602F068941VKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVTKGNFKAYNASSNASGITYASSGVTTLILFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG
Ga0244893_107174Ga0244893_1071744F082887MEKVKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQIIAVVQGVIGTYLLGQKAISNKEG
Ga0244893_109293Ga0244893_1092932F073656MTMEQDQEQMQGALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQTQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244893_113219Ga0244893_1132193F092227MKEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0244893_119559Ga0244893_1195593F047755MENNKVEYLINMINDMDIKDKLRLAICMSQSKWSGLIYNTKENYERFDKMLKEVDEEYRTTLINFTKYKLVMFVMAKLMEMETTEQNKVALYLFNNIKLC
Ga0244893_129329Ga0244893_1293292F097493MYKFYSKNGTAYFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDVTLEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLLLQIAELKAGVSNE
Ga0244893_133433Ga0244893_1334332F088921CKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNK
Ga0244893_150939Ga0244893_1509391F026592CRPQGIDAQASQGSVAPLTERSDETFSVKQFFSADRE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.