NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029483

3300029483: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001857-108



Overview

Basic Information
IMG/M Taxon OID3300029483 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283279 | Ga0244102
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001857-108
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size185156118
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F032286Metagenome / Metatranscriptome180Y
F055775Metagenome138N
F073656Metagenome120N
F078822Metagenome116N
F087336Metagenome110N
F089053Metagenome109Y
F092228Metagenome107N
F099451Metagenome103N
F101356Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244102_100272All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides81526Open in IMG/M
Ga0244102_100436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens58349Open in IMG/M
Ga0244102_100658Not Available44130Open in IMG/M
Ga0244102_101045All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales28548Open in IMG/M
Ga0244102_101598All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus18097Open in IMG/M
Ga0244102_102507All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales11147Open in IMG/M
Ga0244102_104638All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5634Open in IMG/M
Ga0244102_104798All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile5427Open in IMG/M
Ga0244102_108253All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3079Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244102_100272Ga0244102_10027233F099451MEIKNVGQLRKIIENLSDDYEIEMRIRRKLTEEELKHCRYPYPYDTKYLTLEFDDIGVSSKVLCLGVTSNN
Ga0244102_100436Ga0244102_1004366F029444MEVSEQLTGFEPEDLMSWTVSNLQSPFREDFSLKKSGIIAEKESQIFGRRFVGFDS
Ga0244102_100658Ga0244102_10065831F055775MAQIAQQGNLVIEVTTTAAALDGATNKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIHIINANSGAVAAIALN
Ga0244102_101045Ga0244102_1010458F073656MTMEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0244102_101598Ga0244102_1015983F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIEDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANLWVKGYLIDQLAIS
Ga0244102_102507Ga0244102_1025075F032286VTPVRHRTLVFDTRLFAGNATDNTLVTGGTFRFCRLMCPCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTILPFSLALIFTFDFAALSERRSCPEDRFRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKIILAKNIALSRISKRSENAPKNADFHAYGQDRKGAEI
Ga0244102_104638Ga0244102_1046382F089053MEGPRPDKFAFGVRIGRVVDGCRPVKGCITKWIHGSANGQPELFTTEEVNAKNMEVFL
Ga0244102_104798Ga0244102_1047988F078822SSTFFDIFLNFPNAFLKAFYPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0244102_108253Ga0244102_1082532F087336MVCFLTGNQRRAATKERIKDDAIGRGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0244102_127485Ga0244102_1274853F101356IPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
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