| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029482 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133130 | Gp0283297 | Ga0244120 |
| Sample Name | Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001875-22 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 156730072 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola vulgatus | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | China: Shanghai | |||||||
| Coordinates | Lat. (o) | 31.2123446 | Long. (o) | 121.4684853 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042936 | Metagenome | 157 | N |
| F047126 | Metagenome | 150 | N |
| F051936 | Metagenome | 143 | N |
| F078004 | Metagenome | 117 | N |
| F080163 | Metagenome | 115 | N |
| F087335 | Metagenome | 110 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0244120_100519 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae | 48077 | Open in IMG/M |
| Ga0244120_101530 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 16214 | Open in IMG/M |
| Ga0244120_103034 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola vulgatus | 6857 | Open in IMG/M |
| Ga0244120_110596 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae | 1838 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0244120_100519 | Ga0244120_1005197 | F047126 | LFPKAYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETNDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC |
| Ga0244120_101530 | Ga0244120_1015308 | F042936 | VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPSYLGKVYFRSWLRGKG |
| Ga0244120_103034 | Ga0244120_1030341 | F051936 | GFSVLQEHAVMTPVIRIFFVMLIVRYLSIHISIKK |
| Ga0244120_110596 | Ga0244120_1105963 | F080163 | MKTIKFLQESFETKERFQQEISFKYSYNRDTVESVNFRINQRNIKDFYEAMQNFENSLVDEFKEKKTNFCNAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLYVHLVQFDFTTSVLIQGFYNYNHRDLSFSTKLESQVLDSENELLQEKLNLIREEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQEIKL |
| Ga0244120_121884 | Ga0244120_1218843 | F087335 | MLELYFNDGNLLPKNREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIRPVLNEA |
| Ga0244120_134997 | Ga0244120_1349971 | F078004 | RIRLPALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |