NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029466

3300029466: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001853-104



Overview

Basic Information
IMG/M Taxon OID3300029466 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283275 | Ga0244098
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001853-104
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size125077162
Sequencing Scaffolds9
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F039198Metagenome164Y
F042095Metagenome159N
F042936Metagenome157N
F050794Metagenome145N
F057001Metagenome137Y
F059106Metagenome134N
F067720Metagenome125Y
F068941Metagenome124N
F074899Metagenome / Metatranscriptome119N
F078006Metagenome117N
F085718Metagenome111N
F087334Metagenome110N
F089590Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244098_100037All Organisms → Viruses → Duplodnaviria → Heunggongvirae144534Open in IMG/M
Ga0244098_100095All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes84528Open in IMG/M
Ga0244098_101236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales15254Open in IMG/M
Ga0244098_101692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis11492Open in IMG/M
Ga0244098_103627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5352Open in IMG/M
Ga0244098_103749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae5151Open in IMG/M
Ga0244098_112724All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1426Open in IMG/M
Ga0244098_113033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1396Open in IMG/M
Ga0244098_129775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes641Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244098_100037Ga0244098_100037113F089590MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFMEVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0244098_100037Ga0244098_100037115F042095MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGIANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLNDWVNGERRTGWNDDNMSGRGLEHLTGFVAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAVYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0244098_100037Ga0244098_100037158F057001MPIQVPRARANLMTSKDINKVQNEVKKASEKTLTSAVKAWCQIFKSGKEINEILKDNDIKVDKSIVPALVALARDKEVVIQLCKDILPRVDETFCAYKEIERIYLDKQDQDRNTKLSEDKVAEISITGKAHKRFGYNEPIEYEGGVYYEVFNGSDKRIVKCAVPIKRYTFALIAKCVTYYLTHPKNER
Ga0244098_100037Ga0244098_100037171F078006MLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNINDMGDNILRKAADELKKAGCRVFVWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0244098_100037Ga0244098_100037173F085718MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMIENNNVDDYIILRYNETGRRNINGKSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
Ga0244098_100037Ga0244098_10003777F050794MQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMRDLLNELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
Ga0244098_100095Ga0244098_100095135F067720MASTTYKHFVDANKMYAAQEQFRDITKMVCARLRGLTKTYHFAVIGTMVRNAGQLPQPFWLGAACGGGSCSAARCAAKT
Ga0244098_101236Ga0244098_10123619F039198MKLTISEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC
Ga0244098_101692Ga0244098_1016926F087334MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRTAALFEYREKHQ
Ga0244098_103627Ga0244098_1036271F059106IAWKIRAILLQIFAWIVDLKARGHLTGYSRKDIKFRQVTIEVHV
Ga0244098_103749Ga0244098_1037491F042936VEDQGEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0244098_112724Ga0244098_1127241F074899KLFDPHRDPHGEMSGRKQWNKQAATSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSTEKP
Ga0244098_113033Ga0244098_1130332F026592TASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0244098_129775Ga0244098_1297751F068941MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVTKGNFKAYNASSNASGITYASSGVTTLILFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNK
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