NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029449

3300029449: Sediment microbial communities from Yellow Sea, Weihai, China - HGD.1



Overview

Basic Information
IMG/M Taxon OID3300029449 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133104 | Gp0282262 | Ga0243128
Sample NameSediment microbial communities from Yellow Sea, Weihai, China - HGD.1
Sequencing StatusPermanent Draft
Sequencing CenterShandong University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size291499191
Sequencing Scaffolds25
Novel Protein Genes27
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin1122
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0601
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_41
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon1
All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSediment Microbial Communities From Yellow Sea, Weihai, China
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sediment → Sediment Microbial Communities From Yellow Sea, Weihai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationChina: Weihai
CoordinatesLat. (o)37.31Long. (o)122.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020363Metagenome / Metatranscriptome224Y
F025922Metagenome / Metatranscriptome199Y
F033445Metagenome / Metatranscriptome177N
F039153Metagenome / Metatranscriptome164Y
F044784Metagenome154Y
F045728Metagenome / Metatranscriptome152Y
F047968Metagenome149Y
F050310Metagenome145Y
F051165Metagenome / Metatranscriptome144Y
F058179Metagenome / Metatranscriptome135Y
F059891Metagenome / Metatranscriptome133Y
F061655Metagenome / Metatranscriptome131Y
F064746Metagenome / Metatranscriptome128N
F069964Metagenome123N
F071990Metagenome / Metatranscriptome121Y
F072820Metagenome / Metatranscriptome121Y
F076128Metagenome / Metatranscriptome118N
F079636Metagenome115Y
F079672Metagenome / Metatranscriptome115Y
F086646Metagenome / Metatranscriptome110Y
F091989Metagenome / Metatranscriptome107Y
F103319Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243128_1000556Not Available16297Open in IMG/M
Ga0243128_1000895All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes13107Open in IMG/M
Ga0243128_1001705Not Available9568Open in IMG/M
Ga0243128_1001831All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes9223Open in IMG/M
Ga0243128_1003361All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia6660Open in IMG/M
Ga0243128_1005071All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin1125298Open in IMG/M
Ga0243128_1007466All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4250Open in IMG/M
Ga0243128_1007575All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.4217Open in IMG/M
Ga0243128_1021838All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin0602220Open in IMG/M
Ga0243128_1023791All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia2104Open in IMG/M
Ga0243128_1024438All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_42069Open in IMG/M
Ga0243128_1027199All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.1932Open in IMG/M
Ga0243128_1035792Not Available1618Open in IMG/M
Ga0243128_1036809All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon1588Open in IMG/M
Ga0243128_1039417Not Available1516Open in IMG/M
Ga0243128_1058262Not Available1154Open in IMG/M
Ga0243128_1060349All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin1121125Open in IMG/M
Ga0243128_1068460Not Available1024Open in IMG/M
Ga0243128_1071209All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon994Open in IMG/M
Ga0243128_1079957All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon908Open in IMG/M
Ga0243128_1086729All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.852Open in IMG/M
Ga0243128_1086750Not Available852Open in IMG/M
Ga0243128_1100743All Organisms → cellular organisms → Bacteria → Proteobacteria761Open in IMG/M
Ga0243128_1118182All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes672Open in IMG/M
Ga0243128_1135894Not Available597Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243128_1000556Ga0243128_10005565F044784MKRGWEVELSNGVILRESDLDWKKVPKNQIVRLSLFYDGRHWDLMGKEAYFVKYRASMVPGIQDSFRIERRTIGFYEGANKVCYHVDEFTGKFNIEVINTNE
Ga0243128_1000895Ga0243128_100089519F020363MWRWRRVAVARVFALVVRCRIKRLLLYSRVGKNRDTKRESPAGAGAGRTANQLTFLFSQKILAVRSANDIYRPVIGRYC
Ga0243128_1001705Ga0243128_100170516F025922MASRNRIIYGSQSVWCNGEILYRVQTLGSTTTFTSEDIFEIGHLDIIDVVDDVPSVAVTLNTNDWGDVKTFAVLAQVPSAKLSMDATATDTNANLAIVSGTLLTETGTYLHGVSLADFAVTCGNLTGVSVWAPVQSECDLGTLATNIDQTMYMDKVYINSLEFSYTTGANATENYGAETDQKMWLLNTGRFINWEEYDY
Ga0243128_1001831Ga0243128_10018319F020363MWRWRRVAVARVFAIVVRCRVMRLLLYSRVGKNRDTRRESPAGTGAGRTADHLTVLFSQKVLAVREANDIYRPVTASIFLLSTDF
Ga0243128_1003361Ga0243128_10033619F051165MTTSFQKALAIMASVASVLAGVVTIASFLSGEDVSLPPSLTTPSSESQPIIIHARVVFIEKNMTYAIDYDKNLILLNESTIIV
Ga0243128_1005071Ga0243128_10050712F103319MADQYNSIGHHPKSTYMTSEGHALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTNQEHTYTGTFTYASFLVTGENVLTQKDVLALTQLLQDQADEGVSKYFDIYIIEVQGKRTPGTGTTFEEQVEAALQNESMVGYIEALVDCKVTKVNRDIPEKNTVVSSREFKYSYKLPR
Ga0243128_1007466Ga0243128_10074664F020363MQLGITFGGMWRWRRVAVARVFALVVRFRVMMLFVYCRVGKNRDTRRESPAGAGAGRTADHITVLFSQKILAVREANDIYRPVTASIFLLSTYF
Ga0243128_1007575Ga0243128_10075755F091989MRLSAYAHDIINRARANGYATDASKASDPLIRPFGEHDEQKGTLMSLQGSTLALCWVNSEGKAVPFNEAEFNSVQKEIAVLQSKVDHNTKILDALDAKVAELGLTEFSLAKLKGQKEKLRMEINQIRAEENDSLRSRWESVVSLGGNRGTYDALPEVIEARAKAAAQIEPIEAEILALDRQIRDLESILSKFKR
Ga0243128_1021838Ga0243128_10218382F076128MLIEILILLFFLVASLYLAYQFRSCGHQMVTLQGSNATLSADLEKTREENLKLMSELQKTQADLALTRGELEKTRAALNSCTDAINGGS
Ga0243128_1023791Ga0243128_10237913F039153MKYTVITPAATKQYNTAVLFLNNSHGARRLNFSPFHKEVKQWAKHQGYSAKLYLRSAAIECNNPDLPKESKLFVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEYNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERA
Ga0243128_1024438Ga0243128_10244381F059891MDAAGFLKLKRGYWVIESALHHALDVTLREDHSRVRYPKAAFVLSLFRRIVVSFAQVWVAHCRKLNPKSRVTTRKFQQRFSRADGGPSRLHALMFAKSPVSWLSPA
Ga0243128_1027199Ga0243128_10271992F064746MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPDDLEDQFGIPDGAYDWTGLADYGAFDYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAIAFFLDDNTVALIGVETTNDFGMSAWDVINSITVN
Ga0243128_1027339Ga0243128_10273392F020363MTHNVRRYVALASRCIGTVARVFALVMRCRVMLLLLYSRDGKNRDTRRESPAGAGAGRTADHLVVLFSQKILAVRSANDIYRPVSKRIYYEDNELH
Ga0243128_1035792Ga0243128_10357922F071990MAEPTTRFRAWPIATTAAELDTSAKRLAAVSGESTVSTGDGNELDFGTIDISSGAANSAVKVCAWDVTADGGNTTVETFKLWLSSNGFDQAGTVVKFQPLSGGDNAAPSNTENYAANAVVGSYTWADMPEAEPGTQNVWPTDEGSSMALSTTSDDVVFWAEYLAVASGETTGTYKGTTTDYEFQHSF
Ga0243128_1036809Ga0243128_10368092F047968MGIGVVDKHKEKLIKAISEEITVLFEKILNYAELSVANREQYKVLRSRILRLGNNSIRNLTREINSRYNIKYNPPAETIIEIKNDREAKV
Ga0243128_1039417Ga0243128_10394171F033445MEKIILNRRLILLSLITALMLWATPLQANDVCFSEGDASKIVVELERGRFCEQQVVQYEVSVRELSIQIESLNTQVETMSKKFDETMKQLEAERKIADEKDKARLEEIKAAGKPQWTMLFGGFGAGALLIGALALLL
Ga0243128_1058262Ga0243128_10582621F050310MASMQSFIVGIVLVGVTLVIGIFISSEIADQMDDSSAEQNAANDLVTALSGGSAWITILVVVGFATIVLGMLTSGLGARKKEESIYTY
Ga0243128_1060349Ga0243128_10603492F103319MADQYNSIGHHPKSTYMTSEGYALHNISGLDLIIDIAGVYFPLRSINYAANHNVTDEHGTGTHDPVALTSQEHTYSGSFTYASFLVTGENVLTQKDVLTLSNRLQDQADEGLSKYFDIYIIEVQGKRTPGAGTTFEEQVEAALQNESMVGYIEALVDCKVTKVNRDIPEKNTVVSSREFKYSYKLPR
Ga0243128_1068460Ga0243128_10684601F072820MKPLHQITVDAVTIRGIIDYLEKSVEPVGLHELAMTQHISNGTALRLCRILEKATIIEHPVVTRVVMGASQEVPQLAWQLTKPFFLGGCVYNAEELAGGMA
Ga0243128_1071209Ga0243128_10712092F079636GYTIDNPNVTAADGTITTLGETQVLGFDLTGNDSLVMPIRKEYEAHDDPTLLRRQKQGFFGWAELGFACLDSRMLGMGIIDRSL
Ga0243128_1079957Ga0243128_10799572F086646MNFIFRIQNHYFEKGTPWVELDKIKQRSWFLSVDIEDDGAVPCYDTVSELRLSKGVAFKSVKILTGKTQETHPYWEALLDMSYSNSTELRDVTFKDLPGESGIYMLNIWFDYDAEELNFGDNFKKLCEYHHKWDDGWICSKCGVRRADWIESDIKTTTREESY
Ga0243128_1083161Ga0243128_10831611F061655MIDTLKLMLNEYEITDNSEIRVQPASYELGTGSKVEYPLFQTPSHGAHYGSKAYLNADNWNLTLKPLPAGNRATGAFLQLSIPKNYYGSNFYSVGEEGTKAVLSKVEGELKEKGVHTSLIEADMSRVDTFKNIE
Ga0243128_1086729Ga0243128_10867294F058179MTAENIALALWLAFIALGVVCIYLLSTAVVDAATLSMSGSCTGQGFTNITMEADLLVAAINQTVNGTTWQIWGAPV
Ga0243128_1086750Ga0243128_10867501F071990MAEPTTRFRDWPIATTVAELDTAAERLAAVASESVVSTGDGNELDFGTIDISGGAANSAVKMCAWDVTADGGNTTVETFKLWLSSNGFDIAGTVAKFQPLSGGDNAAPSNTENYVANAVVGSYTWADMPEAEPGTQNVYPTDEGSSMALSTTSDDVVFWAEYL
Ga0243128_1100743Ga0243128_11007431F079672IIRERYENGILVERTVEGSNTTPWHWLTLVVHTVIAISLVALVAISIHDSLALRAIQSEEDA
Ga0243128_1118182Ga0243128_11181821F045728MSLASVPRESSGQNVIPLMAAQAAPAPAGDSLLVSRF
Ga0243128_1135894Ga0243128_11358941F069964MDIRQLREEKPKLGWLAEVRFNILHNHRKLDELEVLVGAHLKAAGPFKVATRQNFFEFSPDGQRVNLVIREGRKPEGLPYQAVPEAVQLFCNEAIILHKNQHLFWHLTEDEVRQVAAEFRDVAGSGSILV
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