Sample 3300029434

Overview

Basic Information
IMG/M Taxon OID	3300029434 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133117 \| Gp0283016 \| Ga0243855
Sample Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_8_stool_1
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	236953088
Sequencing Scaffolds	16
Novel Protein Genes	16
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F056309	Metagenome	137	N
F056623	Metagenome	137	N
F059982	Metagenome	133	N
F070093	Metagenome	123	N
F071325	Metagenome	122	N
F074898	Metagenome	119	N
F088920	Metagenome	109	Y
F088921	Metagenome	109	N
F090484	Metagenome	108	N
F090515	Metagenome	108	N
F101193	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F042936

Metagenome

157

F044554

Metagenome

154

F047126

Metagenome

150

F056309

Metagenome

137

F056623

Metagenome

137

F059982

Metagenome

133

F070093

Metagenome

123

F071325

Metagenome

122

F074898

Metagenome

119

F088920

Metagenome

109

F088921

Metagenome

109

F090484

Metagenome

108

F090515

Metagenome

108

F101193

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0243855_1000142	Not Available	143101	Open in IMG/M
Ga0243855_1000692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	47738	Open in IMG/M
Ga0243855_1000820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	41069	Open in IMG/M
Ga0243855_1000925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	37025	Open in IMG/M
Ga0243855_1001034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	33703	Open in IMG/M
Ga0243855_1001066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	33038	Open in IMG/M
Ga0243855_1002285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16328	Open in IMG/M
Ga0243855_1002743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13462	Open in IMG/M
Ga0243855_1002865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12889	Open in IMG/M
Ga0243855_1003145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	11671	Open in IMG/M
Ga0243855_1003533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	10247	Open in IMG/M
Ga0243855_1014696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1946	Open in IMG/M
Ga0243855_1019182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1463	Open in IMG/M
Ga0243855_1021203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1320	Open in IMG/M
Ga0243855_1033693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	837	Open in IMG/M
Ga0243855_1044196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	650	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0243855_1000142

Not Available

143101

Open in IMG/M

Ga0243855_1000692

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

47738

Open in IMG/M

Ga0243855_1000820

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

41069

Open in IMG/M

Ga0243855_1000925

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

37025

Open in IMG/M

Ga0243855_1001034

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

33703

Open in IMG/M

Ga0243855_1001066

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

33038

Open in IMG/M

Ga0243855_1002285

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

16328

Open in IMG/M

Ga0243855_1002743

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

13462

Open in IMG/M

Ga0243855_1002865

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

12889

Open in IMG/M

Ga0243855_1003145

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

11671

Open in IMG/M

Ga0243855_1003533

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

10247

Open in IMG/M

Ga0243855_1014696

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1946

Open in IMG/M

Ga0243855_1019182

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

1463

Open in IMG/M

Ga0243855_1021203

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1320

Open in IMG/M

Ga0243855_1033693

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

837

Open in IMG/M

Ga0243855_1044196

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

650

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0243855_1000142	Ga0243855_100014264	F090484	MNRMDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISVQSLPNINTTVDNDKELDGESVFKDIPLEELSFYNDTYLYPSSQYSSL
Ga0243855_1000692	Ga0243855_100069218	F088921	LGGCKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMQSK
Ga0243855_1000820	Ga0243855_100082034	F056309	MWNAVRNSWRVRSTVKGTKRTCLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKD
Ga0243855_1000925	Ga0243855_10009254	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0243855_1001034	Ga0243855_10010341	F056309	SLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD
Ga0243855_1001066	Ga0243855_100106630	F071325	IFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243855_1002285	Ga0243855_100228516	F088920	VSANLHHYPAFGAGLILHLILHFSQKVAIFAPKRAFLFLFVPTLFFASLSVLSPQTSPKISGQSSLYQPWLSPYCLFKD
Ga0243855_1002743	Ga0243855_100274310	F071325	PSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL
Ga0243855_1002865	Ga0243855_10028654	F044554	VLAGRFIPALCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLRFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0243855_1003145	Ga0243855_10031457	F090515	VTTCCKAGPKAALQGTAPRRVACLEFAGGEKRKANIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0243855_1003533	Ga0243855_10035331	F070093	LLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0243855_1014696	Ga0243855_10146962	F056623	AAALQSMTLIRAEIPAAQKRDWKPLILPFAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0243855_1019182	Ga0243855_10191821	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEYTIRNFEKVEQEGALTPPYLGKMYFRSRLRGK
Ga0243855_1021203	Ga0243855_10212031	F074898	QWAQLLVEGRPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQTGSNFSLRLDNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQAGTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPEAIGTIELTQLLDVLFYSTSHKSGHPFTAGV
Ga0243855_1033693	Ga0243855_10336931	F101193	MARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVYIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDE
Ga0243855_1044196	Ga0243855_10441961	F059982	MRRMTRLLCLMLLFSLITFSCPLAEETTAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPVLMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDA

Scaffold ID

Protein ID

Family

Sequence

Ga0243855_1000142

Ga0243855_100014264

F090484

MNRMDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISVQSLPNINTTVDNDKELDGESVFKDIPLEELSFYNDTYLYPSSQYSSL

Ga0243855_1000692

Ga0243855_100069218

F088921

LGGCKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMQSK

Ga0243855_1000820

Ga0243855_100082034

F056309

MWNAVRNSWRVRSTVKGTKRTCLRRTPSLSVVPLLLGDSGSLSVSYGMEPEQEALSIVSFKD

Ga0243855_1000925

Ga0243855_10009254

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Ga0243855_1001034

Ga0243855_10010341

F056309

SLSVVPLLLGGSDSLSVSYGMEPEQEALSIVSFKD

Ga0243855_1001066

Ga0243855_100106630

F071325

IFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0243855_1002285

Ga0243855_100228516

F088920

VSANLHHYPAFGAGLILHLILHFSQKVAIFAPKRAFLFLFVPTLFFASLSVLSPQTSPKISGQSSLYQPWLSPYCLFKD

Ga0243855_1002743

Ga0243855_100274310

F071325

PSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL

Ga0243855_1002865

Ga0243855_10028654

F044554

VLAGRFIPALCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLRFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

Ga0243855_1003145

Ga0243855_10031457

F090515

VTTCCKAGPKAALQGTAPRRVACLEFAGGEKRKANIAADYAVKVPAFTALLCRHIGSIRTFLKS

Ga0243855_1003533

Ga0243855_10035331

F070093

LLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN

Ga0243855_1014696

Ga0243855_10146962

F056623

AAALQSMTLIRAEIPAAQKRDWKPLILPFAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG

Ga0243855_1019182

Ga0243855_10191821

F042936

MGRGGGKGRVWKTKEGIMKTSGIVDRGEYTIRNFEKVEQEGALTPPYLGKMYFRSRLRGK

Ga0243855_1021203

Ga0243855_10212031

F074898

QWAQLLVEGRPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQTGSNFSLRLDNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQAGTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPEAIGTIELTQLLDVLFYSTSHKSGHPFTAGV

Ga0243855_1033693

Ga0243855_10336931

F101193

MARYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVYIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDE

Ga0243855_1044196

Ga0243855_10441961

F059982

MRRMTRLLCLMLLFSLITFSCPLAEETTAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPVLMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGAAVYVAEDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029434: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_8_stool_1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences