NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029377

3300029377: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_30_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029377 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0283064 | Ga0243903
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_30_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size264496329
Sequencing Scaffolds14
Novel Protein Genes17
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F039198Metagenome164Y
F044555Metagenome / Metatranscriptome154N
F052660Metagenome142N
F056682Metagenome137Y
F059106Metagenome134N
F068855Metagenome124N
F070133Metagenome123N
F078004Metagenome117N
F080163Metagenome115N
F081354Metagenome114Y
F089005Metagenome109N
F101357Metagenome / Metatranscriptome102N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243903_1000026All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes231399Open in IMG/M
Ga0243903_1002107All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii18682Open in IMG/M
Ga0243903_1002422All Organisms → cellular organisms → Bacteria16447Open in IMG/M
Ga0243903_1002953All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii13442Open in IMG/M
Ga0243903_1004207All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales9304Open in IMG/M
Ga0243903_1006378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5713Open in IMG/M
Ga0243903_1008782All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii3967Open in IMG/M
Ga0243903_1009612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3608Open in IMG/M
Ga0243903_1013878All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae2459Open in IMG/M
Ga0243903_1019761All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1747Open in IMG/M
Ga0243903_1021261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1634Open in IMG/M
Ga0243903_1024297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1445Open in IMG/M
Ga0243903_1037973All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales984Open in IMG/M
Ga0243903_1049362All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium785Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243903_1000026Ga0243903_100002679F039198MQITNTEIQGTKYVQIYVTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVELNRNVC
Ga0243903_1002107Ga0243903_100210710F026489LVAKENQKTTSDFDALEPRKRGCSPLLTPKRWAAPEKTEDSRLFGVKIF
Ga0243903_1002422Ga0243903_100242217F080163MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFSEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIEWLQEKLNLIREEICKLIGVNPNLEKQGHEDNYVFNLNIDSDNQIGFFLQETEL
Ga0243903_1002422Ga0243903_100242220F044555MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPNLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0243903_1002953Ga0243903_100295315F089005LTKSKQSSTIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRN
Ga0243903_1004207Ga0243903_10042073F052660MCILHILPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRQFLHGGILMGIALPIPSHRAKSHDFACWWPATAGHSRSADALPGKSNS
Ga0243903_1006378Ga0243903_10063782F068855VPTVEAQGPQVRKSLALQGLQAEKEXXXXERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGATW
Ga0243903_1008782Ga0243903_100878210F105375MKNIETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0243903_1008782Ga0243903_10087827F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSXXXF
Ga0243903_1009612Ga0243903_10096124F052660MCILRILPENTPEKIGQERAGTEWTVVKSKIRLRIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFAYWWPAAAGHSRSAD
Ga0243903_1013878Ga0243903_10138783F059106ASVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243903_1019761Ga0243903_10197612F056682MKMQSRAGKVANQPIGQSKTHSASFGAFSSKNRITFPIQELGKIHENQEVL
Ga0243903_1021261Ga0243903_10212612F056682MKMQSRAGKVANQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNRENQEVL
Ga0243903_1024297Ga0243903_10242971F039198MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC
Ga0243903_1037973Ga0243903_10379731F070133MKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLRIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEH
Ga0243903_1049362Ga0243903_10493623F081354VKDFSSIFPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNTLR
Ga0243903_1068022Ga0243903_10680221F078004LSAVAGSAALDVHMLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
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