| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029174 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127413 | Gp0192415 | Ga0168029 |
| Sample Name | Aquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Michigan State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 29749109 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 22 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Not Available | 8 |
| All Organisms → Viruses → Predicted Viral | 5 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_5 | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2 |
| All Organisms → Viruses | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Aquariaum Water Viral Communities From Chicago, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Chicago | |||||||
| Coordinates | Lat. (o) | 41.87 | Long. (o) | -87.61 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001484 | Metagenome / Metatranscriptome | 686 | Y |
| F008183 | Metagenome / Metatranscriptome | 337 | Y |
| F014122 | Metagenome / Metatranscriptome | 265 | Y |
| F024268 | Metagenome / Metatranscriptome | 206 | Y |
| F028485 | Metagenome / Metatranscriptome | 191 | Y |
| F031688 | Metagenome / Metatranscriptome | 182 | Y |
| F042051 | Metagenome / Metatranscriptome | 159 | Y |
| F045186 | Metagenome / Metatranscriptome | 153 | Y |
| F052619 | Metagenome / Metatranscriptome | 142 | Y |
| F053563 | Metagenome / Metatranscriptome | 141 | N |
| F062887 | Metagenome / Metatranscriptome | 130 | Y |
| F063690 | Metagenome / Metatranscriptome | 129 | Y |
| F078200 | Metagenome / Metatranscriptome | 116 | Y |
| F079968 | Metagenome / Metatranscriptome | 115 | Y |
| F085584 | Metagenome | 111 | Y |
| F086799 | Metagenome / Metatranscriptome | 110 | Y |
| F086975 | Metagenome / Metatranscriptome | 110 | Y |
| F091439 | Metagenome / Metatranscriptome | 107 | Y |
| F091908 | Metagenome / Metatranscriptome | 107 | Y |
| F104784 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0168029_100009 | All Organisms → cellular organisms → Bacteria | 34952 | Open in IMG/M |
| Ga0168029_100034 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 17357 | Open in IMG/M |
| Ga0168029_100145 | Not Available | 7955 | Open in IMG/M |
| Ga0168029_100177 | All Organisms → cellular organisms → Bacteria | 7211 | Open in IMG/M |
| Ga0168029_100603 | All Organisms → Viruses → Predicted Viral | 3669 | Open in IMG/M |
| Ga0168029_100634 | All Organisms → Viruses → Predicted Viral | 3527 | Open in IMG/M |
| Ga0168029_100848 | All Organisms → Viruses → Predicted Viral | 2972 | Open in IMG/M |
| Ga0168029_101057 | All Organisms → Viruses → Predicted Viral | 2600 | Open in IMG/M |
| Ga0168029_102107 | Not Available | 1707 | Open in IMG/M |
| Ga0168029_102774 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_5 | 1441 | Open in IMG/M |
| Ga0168029_103205 | Not Available | 1321 | Open in IMG/M |
| Ga0168029_103242 | Not Available | 1311 | Open in IMG/M |
| Ga0168029_103958 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dojkabacteria → Candidatus Dojkabacteria bacterium | 1163 | Open in IMG/M |
| Ga0168029_104065 | All Organisms → Viruses → Predicted Viral | 1144 | Open in IMG/M |
| Ga0168029_104610 | Not Available | 1062 | Open in IMG/M |
| Ga0168029_107609 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 808 | Open in IMG/M |
| Ga0168029_108988 | Not Available | 747 | Open in IMG/M |
| Ga0168029_109196 | Not Available | 740 | Open in IMG/M |
| Ga0168029_112214 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 656 | Open in IMG/M |
| Ga0168029_113811 | All Organisms → cellular organisms → Bacteria | 620 | Open in IMG/M |
| Ga0168029_115250 | Not Available | 590 | Open in IMG/M |
| Ga0168029_115866 | All Organisms → Viruses | 577 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0168029_100009 | Ga0168029_10000923 | F086799 | MKVTKVAYSRLVSKGNYENAKIEIEAEVEQGDLARDVYEKIKEWVDKRVEIEKMSDAAIMRARRVMEDKRHHTLAQIEEAEELLKKCGPDDSLPF |
| Ga0168029_100034 | Ga0168029_10003417 | F014122 | MSFLAARNAVAIGLGGIVSLFGGRASEVAQSNLLTESGDNLVQEDGGLILLE |
| Ga0168029_100145 | Ga0168029_1001452 | F008183 | MAFENAEIDPVKYGVLWQKVQDMDKKVDKMERQLEQLLELANKGKGGLWFGMTVASAVSGFVGFVISHWKGN |
| Ga0168029_100177 | Ga0168029_1001776 | F014122 | MSFLAARNAIGIGLGGILSLFGGRGSDQAVGNLLCENGDNLVQEDGGLILLE |
| Ga0168029_100603 | Ga0168029_1006033 | F104784 | MIPINKSAYLTVRVADKTRTKFHAKARKFGTPSEVLRELIDAFIEDRVTINPPVTGNPKEKLYVPRSQD |
| Ga0168029_100634 | Ga0168029_1006341 | F091439 | MRAVLSPDDLKRGDLAEVGWHPAEIIDYDEKPADTDQSTNCIFKLKLIDGPNKGVVCQKLFNEKALGFGKNLWKTLQFPYDPVKGYELTTELFKQTIGSKLKVYIKRGKSNKGNEFNDVTDFMPLG |
| Ga0168029_100848 | Ga0168029_1008484 | F079968 | MIGTIFRKHIERYEAGTSGGSLYQAWKVVADLGQGIYSCVRVDNTQDPMGAASPIKRTFKEADIKKYLQNNR |
| Ga0168029_101057 | Ga0168029_1010574 | F085584 | MKKPLILSLEDENTSLFSKQYLSIPDLHEEIEKRLEDLKTMDKRKKKQLMQAKEDVNFLIDMYNAKAKFKTYNKVK |
| Ga0168029_102107 | Ga0168029_1021072 | F024268 | MTELYSGTEAVSTTEHSLTTDTAGPDADTTPGVFQLFLDLSDMVAGDQLQIRLYEKVRSGDTQRVVEEWILTGPQSKPNFTLPAFALMHGWDFTLDALAGTITVNWSIRQIG |
| Ga0168029_102774 | Ga0168029_1027742 | F045186 | MASGKSGGGGKFMDNAVGMCSYKKNPMSAASRVAPMCGPGANPDQRKANKLLQKAHRDWDSQRGQSGM |
| Ga0168029_103205 | Ga0168029_1032053 | F078200 | MAAVYANSSNQIAALKELYTDDKEYMKDLVYKENPFLALVPKNESPDGFAGKR |
| Ga0168029_103242 | Ga0168029_1032421 | F031688 | MKTYIVYVNGFEAGTIKAGSHNAAEKKAKAKHPGKDVSVAYTEV |
| Ga0168029_103958 | Ga0168029_1039582 | F091908 | MAKSLNECPKVVTKPGGRVGGTNAAPKVVTNPTRYTGGMNKAACDVPKKRK |
| Ga0168029_104065 | Ga0168029_1040653 | F086975 | MLSPRLTSCPECASIPALIADIDCKLASLANNLYNNVVFMLNQPVPGGVMLALINYRRILAYKYCNPDYAAPFTVNMIAS |
| Ga0168029_104610 | Ga0168029_1046101 | F053563 | FPSHDQKRLSTEGQNVVDNRFWGSDPSILNKQIKKAKEISGQVEDPKTGEILEEGAPVYGVYFNAAGDNVNFSTMVSDVTLNMLPNMKITKKAAKQFDEKLRERIPDWPGLNNLEASDIDAVRTYFRGPNRGEARKAFSEEMAKPRSMKLGFPDQASVRAAVSKADMLGMGSGDAAGRMIAQIDYNAPVDPVSMHTTYPAGLKRVEGTPVYRMADESGNFRDVPTSMFFNDFYNDRIIDGVVPPEATTIRSMELRQATQPATRELSDIINEYLYQTDDTRRGYPYNR |
| Ga0168029_107609 | Ga0168029_1076091 | F028485 | GVLASFPEGYLYGTLQCYYDKNKNVEEAQKWQVRFDDAYGLIEDQNYRGRWRGGDQHLTSEFQPRDYRYSFK |
| Ga0168029_108988 | Ga0168029_1089881 | F063690 | KLLKSAPRMRNTLPQNITRGNGVKNPQKASAYVGKGVLKNGDTITAIKGSITPVPNGPLIKKKGPFKGSTLKKGGAIVKVGGQTHKVFKNKKGDVIVDHTAGIPAGKWDKINLTKKAKAKTVKQGVASVRKWHRENPNYYKKKK |
| Ga0168029_109196 | Ga0168029_1091961 | F078200 | MATFATASNQVAALKELYDNPSNYLKDLVYKKNPLLALISKNESPSGMAGKYLP |
| Ga0168029_112214 | Ga0168029_1122141 | F042051 | MTTFGEVSWNDDLEGFNNKKTNSKDLFLKLDEGSNEVRLITQPFQYLVHKYKKDESDKYGQKVSCSAVHGSCPLCAMGDKAKPRWLLGVISRKTGTYKILDISFAVFSQVRKLARNTQRWGDPTKYDIDIVVDKQGGATGYYSVQPVSKEPLSAEDQKIKDNADLDDLKRRVTPPDRDWE |
| Ga0168029_113811 | Ga0168029_1138111 | F001484 | LATLRGSGVITQWDVENKQIQVTPAISGAVTGDKLVVNGISSPASLPALYGVPYHHSNASAGTWLGFSRSNTPEIRANRVNAASSGLALTFARLAMNKVGNRVGIDNTFKPRAWTHPCQQQAYEEIGQLVSIIQKMPKEESLNMYFGDGMQLAGAALTPSFNWNQTRIDFVVDEVWGRGEILPVGFYTTDGRRIFEIRGPSGGVAT |
| Ga0168029_115250 | Ga0168029_1152503 | F062887 | MPVRKTSGGYKYGNKGKLYKGKGAKAKATKQGRAIRASQAKKK |
| Ga0168029_115866 | Ga0168029_1158661 | F052619 | FPSHDQARYDFSTDGINPTLVAFVFTLDQLPDYTDFTRLFDMYKIQKIEIQWNPEYTELTDAALVSNAVNVYVNSVVDLTDASSPSSVDELLQSQQLQQTSVTKVHSRKWQPTFLMAGLVPCSCWLPTSSPSERHYCVKVAVPPTGVAMTFRSRAKFSLEFANVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |