| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029171 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127413 | Gp0192420 | Ga0168034 |
| Sample Name | Aquariaum water viral communities from Chicago, USA - Great Lakes - GLA2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Michigan State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 27431803 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Aquariaum Water Viral Communities From Chicago, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Chicago | |||||||
| Coordinates | Lat. (o) | 41.87 | Long. (o) | -87.61 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022890 | Metagenome / Metatranscriptome | 212 | Y |
| F024268 | Metagenome / Metatranscriptome | 206 | Y |
| F029893 | Metagenome / Metatranscriptome | 187 | Y |
| F031688 | Metagenome / Metatranscriptome | 182 | Y |
| F051532 | Metagenome / Metatranscriptome | 144 | Y |
| F087386 | Metagenome / Metatranscriptome | 110 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0168034_100003 | All Organisms → cellular organisms → Bacteria | 69849 | Open in IMG/M |
| Ga0168034_101359 | Not Available | 2404 | Open in IMG/M |
| Ga0168034_102405 | Not Available | 1630 | Open in IMG/M |
| Ga0168034_102963 | Not Available | 1395 | Open in IMG/M |
| Ga0168034_103853 | Not Available | 1161 | Open in IMG/M |
| Ga0168034_104201 | Not Available | 1091 | Open in IMG/M |
| Ga0168034_104315 | Not Available | 1072 | Open in IMG/M |
| Ga0168034_108051 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae | 700 | Open in IMG/M |
| Ga0168034_113825 | Not Available | 524 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0168034_100003 | Ga0168034_10000325 | F087386 | MTKEELFKKYSIKESHSEWNYSIDNWMSVEIYRIMHEGNLPPQDGSDTSVKWITDFLDKTEDVTFVKDLMSKGKFGSLYLTAHRMVYRYHQQLIS |
| Ga0168034_101359 | Ga0168034_1013591 | F029893 | MPTMQDSVSVAGNSVSANVLSGQLYEFVDPGTQVTVSVTGSATGLRTTFICGVPLINDQAINLQNRFPLVPDDIIHSGQVPGGRMVLTARNTTAGALTYFWRVDI |
| Ga0168034_102405 | Ga0168034_1024052 | F029893 | MPTMQDSLSVAANSVSTNVLSGQLYEFVDPGTNVTVSVTGSGTGLRTTFICGVPLINDQAINLQNRFPLVPDDIIHSGPVPGGRMVLTARNATGGALTYFWRVDL |
| Ga0168034_102963 | Ga0168034_1029632 | F051532 | VEIKEKKYEEELAEDIMKILTCYSARYYGARGGRKKKIEPVKEPNESNGI |
| Ga0168034_103853 | Ga0168034_1038532 | F024268 | MAITELYSGTEAVSTTEHSITTDTAGPDVDTTDGIFQIFLDVSDMIAGDELQIRIYEKVRSADTQRICYQTTLMGAQANPIWVSPSLILLHGWDCTLDAISGTITVNWSVRQVT |
| Ga0168034_104201 | Ga0168034_1042013 | F022890 | MTTRKIVNLMIKSSDHNPYTGNLSRSENILAAIQLAELCKDFADKGQMDEAMNIESSQWVEVISKLKIKN |
| Ga0168034_104315 | Ga0168034_1043151 | F031688 | VKTYIVYVDGVEVGMIKAGSHNAAEKKAQKKYPGKNVSVAYTEV |
| Ga0168034_108051 | Ga0168034_1080512 | F024268 | MAITEAFAGSEAVGTTEWSCTTDTAGPDAETSDGVFQVFLDLSDMVAGDELQIRIYEKVQSTDTQRVVYQSNLVGPQSPPNWVSPSLVLMHGWD |
| Ga0168034_113825 | Ga0168034_1138252 | F029893 | MPTMQDSLSVAANSVSTNVLSGQLYEFVDPGTNVTVSVTGSATGLRTTFICGVPLINDQAINLQNRFPLVPDDIIHSGPVPGGRMVLTARNATGGALTYFWRVDL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |