Sample 3300029142

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300029142

3300029142: Aquariaum water viral communities from Chicago, USA - Stingray Touch - STA2

Overview

Basic Information
IMG/M Taxon OID	3300029142 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127413 \| Gp0192426 \| Ga0168040
Sample Name	Aquariaum water viral communities from Chicago, USA - Stingray Touch - STA2
Sequencing Status	Permanent Draft
Sequencing Center	Michigan State University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	5708866
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Aquariaum Water Viral Communities From Chicago, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	na → na → na

Location Information
Location	USA: Chicago
Coordinates	Lat. (^o)	41.87	Long. (^o)	-87.61	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091007	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168040_10730	Not Available	1239	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168040_10730	Ga0168040_107301	F091007	MARIFNEKKADYKGMQLWLNPADESVYATERAPTHSFAEAGGYAIYDFKKHFANKEAGKDSMGSNQYMHDAFVDPEFKATAEDYIADIKAGGRQRTAALRSFTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFGGMTQLDEGQLGQLKELTYSRQNFEANKYGL

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