NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029051

3300029051: Human fecal microbial communities from mother in Denmark - 350_M



Overview

Basic Information
IMG/M Taxon OID3300029051 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193663 | Ga0169669
Sample NameHuman fecal microbial communities from mother in Denmark - 350_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size158985529
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047126Metagenome150N
F059106Metagenome134N
F067720Metagenome125Y
F067844Metagenome125N
F076189Metagenome118N
F078004Metagenome117N
F080163Metagenome115N
F088921Metagenome109N
F089005Metagenome109N
F099451Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169669_100217All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale84368Open in IMG/M
Ga0169669_100425All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides53789Open in IMG/M
Ga0169669_100535Not Available43536Open in IMG/M
Ga0169669_101783All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii14448Open in IMG/M
Ga0169669_101815All Organisms → cellular organisms → Bacteria14216Open in IMG/M
Ga0169669_102191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii11855Open in IMG/M
Ga0169669_103499Not Available7243Open in IMG/M
Ga0169669_104693All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile5292Open in IMG/M
Ga0169669_104902All Organisms → cellular organisms → Bacteria5037Open in IMG/M
Ga0169669_109527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2405Open in IMG/M
Ga0169669_112880All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741730Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169669_100209Ga0169669_10020927F078004LSSRNTDLLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF
Ga0169669_100217Ga0169669_1002171F067844MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADVIT
Ga0169669_100425Ga0169669_10042525F099451MAIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDDEIRELHNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKNE
Ga0169669_100535Ga0169669_10053554F067720MASTTYRHLGDVTGMFAAQEQFRDITKMVCARFRGLTKTYHLGNVNKLVTFCHRFAVIGNMVRNAGQLPQPFWLGAACGGGSCGAARCAARP
Ga0169669_101783Ga0169669_10178319F089005LTKSKQRSIIALALLRCATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQE
Ga0169669_101815Ga0169669_1018155F080163MKTIKFLQESFETKERFQQEINIKYFYNQDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSNISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTELESQVLDSEIELLQEKLDLIREEICELIGIDPNLEKQGHEDNYVFNLNINSDNQIGFFLQATEL
Ga0169669_102191Ga0169669_1021913F076189VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAYFDLYAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL
Ga0169669_103499Ga0169669_10349913F067720MSSTAYEHFVDTNKMYAAQEQFRDITKMVCARFRGLAKTYEFAVLGNMVRNAGQLPQPFWLGA
Ga0169669_104693Ga0169669_1046931F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGSLTQNPAALVETDDIFGVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRNFHILSKKLQKT
Ga0169669_104902Ga0169669_1049024F059106VILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0169669_109527Ga0169669_1095274F067844MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP
Ga0169669_112880Ga0169669_1128803F088921LGATIRLYKIGAGKNHFLSSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKDINGEIYGEKNQIIVANKSAMIRDKLRSK
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