NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029047

3300029047: Human fecal microbial communities from infant at 12 months in Denmark - 263_12M



Overview

Basic Information
IMG/M Taxon OID3300029047 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193593 | Ga0169599
Sample NameHuman fecal microbial communities from infant at 12 months in Denmark - 263_12M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size130040863
Sequencing Scaffolds11
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium3
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F050794Metagenome145N
F055715Metagenome138N
F057001Metagenome137Y
F075481Metagenome119N
F076189Metagenome118N
F078006Metagenome117N
F080673Metagenome115N
F085718Metagenome111N
F089590Metagenome109N
F089591Metagenome109N
F090515Metagenome108N
F093883Metagenome106N
F098313Metagenome104N
F102167Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169599_103579Not Available5629Open in IMG/M
Ga0169599_104368Not Available4728Open in IMG/M
Ga0169599_104778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae4349Open in IMG/M
Ga0169599_104922All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium4242Open in IMG/M
Ga0169599_104948All Organisms → cellular organisms → Bacteria4223Open in IMG/M
Ga0169599_105508Not Available3826Open in IMG/M
Ga0169599_110085All Organisms → Viruses → Predicted Viral2145Open in IMG/M
Ga0169599_115096All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1454Open in IMG/M
Ga0169599_117129All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1288Open in IMG/M
Ga0169599_135326All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis632Open in IMG/M
Ga0169599_138038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales589Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169599_103579Ga0169599_1035795F093883MEENKDIKKEIRDYLKEESDTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDKTSGFVFYDDKERLRYADKELEDMFHDMSVKEVSKIGVVQSYELLMKQYNEFKDIIKNNINSI
Ga0169599_104368Ga0169599_1043684F050794MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYISNYFVKVRQKQLLDHAYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANTIIEHNGIIKKLMKEAEKLELDTDAIKTMMRDLLGELKDDIDLNILIFDVSQLLTKYNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYITEEYN
Ga0169599_104778Ga0169599_1047783F055715MNELLIERTAKKFERTSKNKLKKFLTNEKFRDKINELIRVGTAEILDN
Ga0169599_104922Ga0169599_1049225F102167MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSYKKATKSYTLTSFSFHDKDTDKLRMLIGNAIMAVGYRDNPLTGDGNTTIK
Ga0169599_104948Ga0169599_1049482F098313MREMEFDFVIYPLRSIITVGPDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFANLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQSCDMSLGFKVGEDEHAAYIAGFAGDRVSEFINSKNTD
Ga0169599_105508Ga0169599_1055082F042095MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKAQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLAVSHTMYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFCFLDDWVSGERRTGWNDDNTSGRGLEHLTSFVAAHSNGLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYIAAXXXXQPKTSVLPARSRPQRDS
Ga0169599_105508Ga0169599_1055084F089590MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS
Ga0169599_105508Ga0169599_1055085F075481MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSRTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0169599_110085Ga0169599_1100851F078006GDNILRKAADELKKAGCGVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCRVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0169599_110085Ga0169599_1100853F085718MVIEFDFEIYENGDYDKVYLRDGKEARVLCDNGKGNRPMVVMVEDDNANDYIVLRYNETGRRDINSQSSLDLMLSVKEREPESWVVVISYMDNKDQGQKMVLPNFFSRNIRGDIYLQGSPKSSVSYYVDKLEEDKCLDELCEKIRVKRDRIYNMEIISLSDDEETV
Ga0169599_115096Ga0169599_1150962F080673MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDIIGILIADKKDGSERIKILDMEYTVGKDDMLLLFDTDGIIDECLLVASYIGVNIYFRGQDVNAILNNIDRGKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMNDNKERIDFMFVYFMARILWERGGL
Ga0169599_117129Ga0169599_1171291F057001MISKEINKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEVVIRLCKEILPRVNNTFCAYKEVEREYYDKNEQDKNKKLKMSEIEDIAILGSSHKRFGYNEPIEYDFGIYYETFNGADKRIIKCAVPIKRYTFNLIAKCVTYHLTHPKNER
Ga0169599_135326Ga0169599_1353261F090515PGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0169599_138038Ga0169599_1380381F076189RQAVLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSVHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0169599_139016Ga0169599_1390161F089591YLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWESLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDM
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