NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029040

3300029040: Human fecal microbial communities from infant at 12 months in Denmark - 39_12M



Overview

Basic Information
IMG/M Taxon OID3300029040 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193688 | Ga0169694
Sample NameHuman fecal microbial communities from infant at 12 months in Denmark - 39_12M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size116822182
Sequencing Scaffolds12
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. Marseille-P23981

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F044555Metagenome / Metatranscriptome154N
F047125Metagenome / Metatranscriptome150N
F059106Metagenome134N
F060985Metagenome / Metatranscriptome132N
F062845Metagenome130N
F064817Metagenome128N
F068811Metagenome124N
F080163Metagenome115N
F081453Metagenome114N
F084124Metagenome112Y
F089053Metagenome109Y
F089054Metagenome109N
F094005Metagenome / Metatranscriptome106N
F101357Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169694_100177Not Available85244Open in IMG/M
Ga0169694_100179Not Available84934Open in IMG/M
Ga0169694_100272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii63705Open in IMG/M
Ga0169694_100331All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii55613Open in IMG/M
Ga0169694_100538All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis37385Open in IMG/M
Ga0169694_101594All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii11974Open in IMG/M
Ga0169694_102345All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. Marseille-P23987121Open in IMG/M
Ga0169694_104250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3313Open in IMG/M
Ga0169694_109099All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1474Open in IMG/M
Ga0169694_113906All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii977Open in IMG/M
Ga0169694_116075Not Available844Open in IMG/M
Ga0169694_127954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169694_100177Ga0169694_10017714F094005MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLETIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0169694_100177Ga0169694_10017716F060985MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPYYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0169694_100177Ga0169694_10017717F080163MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINRRNIKDFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNYNHRDLSFSTKLESEVLDSEIELLQEKLDLIREEICELIGIDPNLQKKGHEENYIFNLNIDSDNQIGFLLQATEL
Ga0169694_100177Ga0169694_10017721F044555MKTTNPSSRITISQNGNPILTCKVYKEPNYILSMSNEEILELISGLNYMGNIPMVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEIDPYLQDILQNPEDLISLSQHHKR
Ga0169694_100177Ga0169694_10017728F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNTSNIHYEGGNFPSMLTIQLFNLEF
Ga0169694_100177Ga0169694_10017733F064817MNIKNLFNRFRKSKESKLSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYIRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFFNHSLTYILDQTEEEGQRICIQNIIERNINQENQDENETI
Ga0169694_100179Ga0169694_10017970F089054MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREMLQIPLRDITIIDIISLP
Ga0169694_100272Ga0169694_1002725F084124LNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRKILWALPKPASL
Ga0169694_100331Ga0169694_10033144F084124LNTTAKAFARATKGNKHHFHSQRIALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKIFMGAAQTRNF
Ga0169694_100538Ga0169694_10053827F081453MSPFFLLAGDNIIEKHISANPVYVTNIKAPELAVKGAPGRKCIQ
Ga0169694_101594Ga0169694_10159413F062845MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNTAPSKSCV
Ga0169694_102345Ga0169694_1023455F059106WKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV
Ga0169694_104250Ga0169694_1042503F047125MDVVLLLMVLGVMLSGFRAADALDHIRREIIRQEGKRRDWWS
Ga0169694_109099Ga0169694_1090993F089053MEGSRPDKFAFGVRIGRVVDGCRPAKGCVKKWLYGFANGQPELSTVKEANGKNMEAFV
Ga0169694_113906Ga0169694_1139062F026489SASDFDALEPRKRGCSPLLTPKKWAPPEKTEDSRLFGVKIF
Ga0169694_116075Ga0169694_1160751F047125MDVVLLLMVLGVMLSGFRAADALDHMRKEILRQEGKRRGW
Ga0169694_127954Ga0169694_1279541F068811MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRI
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