Sample 3300028850

Basic Information
IMG/M Taxon OID	3300028850 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321345 \| Ga0307358
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Leu1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Leu1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	55154066
Sequencing Scaffolds	26
Novel Protein Genes	27
Associated Families	24

Dataset Contents

Total Genome Size

55154066

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	17
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.BinA179	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.BinA179

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F020914	Metagenome / Metatranscriptome	221	N
F021795	Metagenome / Metatranscriptome	217	Y
F025291	Metagenome / Metatranscriptome	202	N
F030405	Metagenome / Metatranscriptome	185	Y
F031111	Metagenome / Metatranscriptome	183	N
F031881	Metagenome / Metatranscriptome	181	Y
F034230	Metagenome / Metatranscriptome	175	Y
F051952	Metatranscriptome	143	N
F058971	Metagenome / Metatranscriptome	134	N
F059033	Metagenome / Metatranscriptome	134	N
F059998	Metagenome / Metatranscriptome	133	Y
F062800	Metagenome / Metatranscriptome	130	N
F067770	Metagenome / Metatranscriptome	125	N
F068879	Metagenome / Metatranscriptome	124	N
F070158	Metagenome / Metatranscriptome	123	N
F070165	Metagenome / Metatranscriptome	123	N
F071272	Metagenome / Metatranscriptome	122	N
F072475	Metagenome / Metatranscriptome	121	N
F074841	Metagenome / Metatranscriptome	119	Y
F077368	Metagenome / Metatranscriptome	117	N
F078767	Metagenome / Metatranscriptome	116	N
F101222	Metagenome / Metatranscriptome	102	N
F103316	Metagenome / Metatranscriptome	101	N
F103516	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307358_101474	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2699	Open in IMG/M
Ga0307358_104494	Not Available	1588	Open in IMG/M
Ga0307358_104679	Not Available	1557	Open in IMG/M
Ga0307358_104734	Not Available	1548	Open in IMG/M
Ga0307358_110048	Not Available	1041	Open in IMG/M
Ga0307358_110539	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales	1013	Open in IMG/M
Ga0307358_110833	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	997	Open in IMG/M
Ga0307358_111018	Not Available	987	Open in IMG/M
Ga0307358_111314	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	972	Open in IMG/M
Ga0307358_111697	Not Available	952	Open in IMG/M
Ga0307358_116218	Not Available	788	Open in IMG/M
Ga0307358_116390	Not Available	783	Open in IMG/M
Ga0307358_116527	Not Available	779	Open in IMG/M
Ga0307358_116609	Not Available	777	Open in IMG/M
Ga0307358_116787	Not Available	771	Open in IMG/M
Ga0307358_116908	Not Available	767	Open in IMG/M
Ga0307358_117136	Not Available	761	Open in IMG/M
Ga0307358_120909	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	674	Open in IMG/M
Ga0307358_124748	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	607	Open in IMG/M
Ga0307358_125618	Not Available	595	Open in IMG/M
Ga0307358_125825	Not Available	592	Open in IMG/M
Ga0307358_127881	Not Available	565	Open in IMG/M
Ga0307358_129336	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.BinA179	548	Open in IMG/M
Ga0307358_129823	Not Available	542	Open in IMG/M
Ga0307358_132814	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	512	Open in IMG/M
Ga0307358_133050	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	510	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307358_101474	Ga0307358_1014741	F030405	GYDVVLFILALAKTVTPPGDPRREPGRAAPPTTGLSS
Ga0307358_104494	Ga0307358_1044942	F068879	NKNKTATIPNRPVYVIGAPWRDNWVTKEEGFVAGATACPGSRRGLPPGVTVFANARINK
Ga0307358_104679	Ga0307358_1046792	F031881	MKNFEFKINKKITPIRTGENKFKFDIDNSGITTINITQDKIEDVIYSIFDDSEYMDVVKVITNVKGKQKIPKIFLQGAQYSGNGLIPSSGCGFVDTTDLVLNDVDIEVEKLRMGMELCLDDLVNYSFEVHITDGARNEDLDISDALLAYFTQVLRANIQDYLFNDSTNGIIPKLQAGASAATVTAASELGKLLDIYNSLPEGWQNSTKANPIIFISPNLLTSIRGEIFSATAPITSSIEIINNRFKLPLTNASVITLPFLTGTKAYAGISNYLFAGTDLESDFENVRVWYSDDNETIRFSALLYLGSAIADIGDFVKYEPTQVINQ
Ga0307358_104734	Ga0307358_1047343	F059033	MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVIAKKGANTAYRSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDTTT
Ga0307358_110048	Ga0307358_1100482	F067770	MIEFKYNSPVFKLGKITRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDG
Ga0307358_110325	Ga0307358_1103252	F020914	MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESAEKVEAFSVRR
Ga0307358_110539	Ga0307358_1105393	F030405	RDALQDYDCYLFILALAKTVTPGGSPRREPGQAAPLAT
Ga0307358_110833	Ga0307358_1108332	F070158	SSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY
Ga0307358_111018	Ga0307358_1110181	F062800	VTNRRKGKKGKGSKRKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTASSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVSLASTASATIRVHYHIEWFDLQYAV
Ga0307358_111314	Ga0307358_1113141	F034230	EAAMRRWMILAMLSGFILSGTAAPAQGDASGPETNKLRVTVGPFFTQESDKKIPLESAASRVIRKGKRVNITVTVENYGKEKSEPVRLRYMETDGKAAEPRLYRVESIEPGKKWQRTFMARWETSGRKSVTATLVTPEDKPLVDATGKPRPDTSHTGSVSLTVKRM
Ga0307358_111697	Ga0307358_1116973	F068879	KNKTATIPNRPVYVIGAPWRDNWVTKEEGFVAGATARPGYRRGFPPGVTVFANARINKTT
Ga0307358_116218	Ga0307358_1162182	F070165	MVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDINVSVKVGVLATFEYKYPTGALPDYEPALILVT
Ga0307358_116390	Ga0307358_1163901	F070165	ASLMSCKTAKSLGRFQKPIARLSTDFRESADPGNSKRIMGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTAVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGCLTTFEYKYPTGAHGDYRYEPAVIEVV
Ga0307358_116527	Ga0307358_1165271	F101222	MSVWVAIAINIVVYLVSFAYAWGKLNTKIADIEKRYYELEGKMSDIMECSIQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEVKNGKYIK
Ga0307358_116609	Ga0307358_1166091	F051952	TALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN
Ga0307358_116787	Ga0307358_1167872	F071272	VGYDSWEVGGEMLPDGTGSPPDGHETDMEDWEIITRTVFSEWLRGLETTAKARVYKAAVDQLADSMAAGAWQDGPAPKDGSWILGLFHGLPYVVVYDSWEVGGEMLPDGTGSPPDGHESGWCLAGDSLQVMDKDEPEKWARIIHPDRHMPASWDGPGD
Ga0307358_116908	Ga0307358_1169082	F078767	MTNQITDITDEILAALREAGCRTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQNGINKTKEHCNVLYAAIGKILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR
Ga0307358_117136	Ga0307358_1171361	F103516	RREMRTALILFLAALLAGCGAATNVQVMKPVNGEIQSFLTPELQKSRCYNFLSAGREGEMIARKSNVLLNECNLSAKDAVDRVIYLTYTTRDAYVAESGENQVISKRVMGNKDIEIQSRLFYEKEGGVRGIQVLLNDFVDTNYVRGYEPGWAVRALYREVKMQDGKIAVVRDGMTREEFMKEDEIEHYRMLNRILQEKK
Ga0307358_120909	Ga0307358_1209092	F031111	KKDKSRFLVGKKRYISTIPQNSYYQIIVNIPAAYNFSCYYPQNLLSSQIGKQVKEILKPLNLALIKLSKPKLTFP
Ga0307358_124748	Ga0307358_1247481	F021795	MKKEADRVRRWREKQKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAAIMEKALSSLKRQAYAPPVLRHFPRREEALARAAAAPPAGRVGHDGNRQPRILIDDLANYPSLEDIEREQAAKEQS
Ga0307358_125618	Ga0307358_1256182	F103316	IIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNETLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGDKLTAWLQKLFIKKRYKV
Ga0307358_125825	Ga0307358_1258251	F025291	RDRAWRVITYNYHLGDNSSTGLYTLNVGADQRYMTFQTLLTTDEFLNMAIVYNDFKIHKAVFTSLPTSNSNRLPYLYVDIEPTTSAGVNPNNVRTCADDSARIFAPKALAPQSCEWNLQGIGPNFNIWLDTGSTIPGQFQIGNYIFGSIPINLGWEVKFQLVCEFTNPK
Ga0307358_127881	Ga0307358_1278811	F074841	MKKMSEKTKKEVLKDLEFFFGKPPYESEYVRHHLTSGLFEEACLMKYGYTPIELMIGLDHIQLSKKQKAEAKKDLKMYFGEPPVSKEAIDKRLSSGLLEMQILAKYLMTVEDLMKEVGFKVSK
Ga0307358_129336	Ga0307358_1293361	F058971	MTPNLIINLDIEPITLMWNGQAISLPGSYELVPDNEIKHLHKRVVAVALHERRRVPLYGRVVGKARYGKHSVWLIED
Ga0307358_129823	Ga0307358_1298231	F077368	LIKKSNKMSLNRQIQDSTMLEVSYYHNLIDYQNDARDLFTYMNSSSNDFSQYRDIYANFKIMRVTFETVPAYAFTTTPSDNAMGLFGVRQGVYEASPVTQSVSTLVQYPGTRKLHNYKYLTYSVAVNNGDWFTNTETNSATSRVAKLTYYCAYYKVATTNTAQSIVQVRVVLAAKCRLI
Ga0307358_132814	Ga0307358_1328141	F072475	AMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTFKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNRVMKESIAEHHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP
Ga0307358_133050	Ga0307358_1330501	F059998	DDLEFISDLALLELAKLNPTLSGQPLTEKAKKYFLHEIRSRRWELGRGRQVTPLTETGAIVSDAHGWPVSFQDVIREIAGEMFELPEKKTTVGVMTQDEYISAMRAATTPEQQIEVMNAWTEQQKRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028850: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Leu1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences