| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028849 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321339 | Ga0307352 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Thr1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 47689737 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 17 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 8 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015885 | Metagenome / Metatranscriptome | 251 | Y |
| F017318 | Metagenome / Metatranscriptome | 241 | Y |
| F022683 | Metagenome / Metatranscriptome | 213 | N |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F030405 | Metagenome / Metatranscriptome | 185 | Y |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F051952 | Metatranscriptome | 143 | N |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070167 | Metagenome / Metatranscriptome | 123 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F093911 | Metagenome / Metatranscriptome | 106 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F097599 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307352_105243 | All Organisms → cellular organisms → Bacteria | 1401 | Open in IMG/M |
| Ga0307352_106012 | Not Available | 1310 | Open in IMG/M |
| Ga0307352_106346 | Not Available | 1275 | Open in IMG/M |
| Ga0307352_107375 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 1176 | Open in IMG/M |
| Ga0307352_108553 | All Organisms → Viruses → environmental samples → uncultured virus | 1085 | Open in IMG/M |
| Ga0307352_111359 | Not Available | 927 | Open in IMG/M |
| Ga0307352_114138 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 815 | Open in IMG/M |
| Ga0307352_114314 | Not Available | 809 | Open in IMG/M |
| Ga0307352_116247 | Not Available | 752 | Open in IMG/M |
| Ga0307352_117428 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 720 | Open in IMG/M |
| Ga0307352_119498 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 673 | Open in IMG/M |
| Ga0307352_128921 | Not Available | 533 | Open in IMG/M |
| Ga0307352_129659 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 526 | Open in IMG/M |
| Ga0307352_130332 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 519 | Open in IMG/M |
| Ga0307352_130486 | Not Available | 517 | Open in IMG/M |
| Ga0307352_130666 | Not Available | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307352_105243 | Ga0307352_1052433 | F030405 | AMQGYDVVLFILALAKTVTPPGGPRREPGQAAPLTT |
| Ga0307352_106012 | Ga0307352_1060121 | F015885 | MTVCKEIVDCVLANCSKLLPGIKDRAYFINFDCVDKDASTFDVDNALLLTQLVLKTTSPPCYAYCVEGYNFSNEHTVAMVKGRYQKTWDHNFVFRIFDNTPEVKEWIDNAIGSRFMVIIENNYNKNDGVEAEGRTVFEVLGWDFGLEINAAERDVNSDETLGGWVLTAGCSDTMKESLPPLAYFVGGTIATTRNALASLLAPCCD |
| Ga0307352_106346 | Ga0307352_1063462 | F051952 | YTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSS |
| Ga0307352_107375 | Ga0307352_1073752 | F094051 | MANTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGATSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGKNLGVMRGLMKES |
| Ga0307352_108553 | Ga0307352_1085531 | F017318 | VNRRSSQNKYPVNMRSPTAASPLKFQRTVEGAFDINCDGINPSVGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFISAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK |
| Ga0307352_111359 | Ga0307352_1113592 | F070167 | LDKEGEIMSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAARNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGNLVGASPALLFGTQSPAGLLKLLGLW |
| Ga0307352_114138 | Ga0307352_1141381 | F022683 | MASEMADQMKPLTEFYAKWSKDALEMMSKGLGMYDKMIRAWTEVGGQAQAEQPEDTIKKWADAFGGSYKDLFEMYTQPFKMFGAAGEIPGKEAWQDAFSKWQKMFTAMPSGSTPTSGDEFMNFSKHWFEGYSKVWQAWMESMQTMGEACKAAVSEGENPDAAMGAFTEISDKFMQQWAAFVTDQAQAFFSLWRSRLPDEKTEPKRPKK |
| Ga0307352_114314 | Ga0307352_1143141 | F070165 | MGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSGLDVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV |
| Ga0307352_116247 | Ga0307352_1162471 | F025291 | NLRKEINIFRDRAWRVITYNYHLGDHSSTGFYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307352_117428 | Ga0307352_1174281 | F070158 | LGKLDASPEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY |
| Ga0307352_119498 | Ga0307352_1194982 | F093911 | MRLYDAYKNGEITRTEYLAYLDFGYKPSDSVFLTQNRSTEMVTISYLSMENNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGYIALQSI |
| Ga0307352_123487 | Ga0307352_1234871 | F097599 | HNLQEPDMPDDETKGLLKTIADALTRREPAPVQHVNLTEFENLKKELETAKAQTAELVNLKQELETLKAEKATAEKDTKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQQAEGTGVAGGSGDMGSTEEQKFANMAAEVAKATGIQFV |
| Ga0307352_128921 | Ga0307352_1289211 | F059033 | SLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVIAQKGATTAYCSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDTTTN |
| Ga0307352_129659 | Ga0307352_1296592 | F031111 | VTGMNNQVLFSIFKNKTRRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP |
| Ga0307352_130332 | Ga0307352_1303321 | F077342 | NYVYEITDAKMAGVDLTDFNVAVLLHCVLSDESEKDFIVFSKGSIDQVFDISMQYYLLYSPTYCRNIGNGIFIVSLPFWRMQHIAERENSDIVSAEFEVVIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF |
| Ga0307352_130486 | Ga0307352_1304861 | F059033 | ATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDFGQVVSRKGGSSGSRSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDTTTN |
| Ga0307352_130666 | Ga0307352_1306661 | F025291 | NQRRKQNTGNGKNKHHMVNLQKEINIFRDRAWRVITYNYHLGDNSSTGLYTLNVGADQRYMSFQTLLTTDEFQNMAVVYNDFRIHKAVFTSLPTSNSNRLPYLYVDIEPTTSAGVNPNNVRVCADDSARIFAPKALSAQSCEWNLRGIGSNFNIWLDTGATIPGQFQIGNY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |