| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028848 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321326 | Ga0307339 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gln2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 42226152 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 19 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F036251 | Metagenome / Metatranscriptome | 170 | Y |
| F040648 | Metagenome / Metatranscriptome | 161 | Y |
| F051952 | Metatranscriptome | 143 | N |
| F052619 | Metagenome / Metatranscriptome | 142 | Y |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F068879 | Metagenome / Metatranscriptome | 124 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F092121 | Metagenome / Metatranscriptome | 107 | N |
| F097599 | Metagenome / Metatranscriptome | 104 | N |
| F098317 | Metagenome / Metatranscriptome | 104 | Y |
| F103316 | Metagenome / Metatranscriptome | 101 | N |
| F103498 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307339_109339 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 971 | Open in IMG/M |
| Ga0307339_109738 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 947 | Open in IMG/M |
| Ga0307339_109996 | Not Available | 934 | Open in IMG/M |
| Ga0307339_110346 | Not Available | 918 | Open in IMG/M |
| Ga0307339_110434 | Not Available | 913 | Open in IMG/M |
| Ga0307339_111153 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 876 | Open in IMG/M |
| Ga0307339_111263 | Not Available | 872 | Open in IMG/M |
| Ga0307339_111873 | Not Available | 846 | Open in IMG/M |
| Ga0307339_114227 | Not Available | 759 | Open in IMG/M |
| Ga0307339_114650 | Not Available | 745 | Open in IMG/M |
| Ga0307339_115571 | Not Available | 717 | Open in IMG/M |
| Ga0307339_116212 | Not Available | 700 | Open in IMG/M |
| Ga0307339_116325 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 697 | Open in IMG/M |
| Ga0307339_118851 | Not Available | 637 | Open in IMG/M |
| Ga0307339_119360 | Not Available | 626 | Open in IMG/M |
| Ga0307339_120082 | Not Available | 612 | Open in IMG/M |
| Ga0307339_127362 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307339_109339 | Ga0307339_1093392 | F031111 | VTGMNNQVLFSIFKNKTRRKKEKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP |
| Ga0307339_109738 | Ga0307339_1097381 | F077342 | MARTFNEFVSSTGNYVYEITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTIDEPAREQRREILNPTRIF |
| Ga0307339_109996 | Ga0307339_1099961 | F062800 | VTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV |
| Ga0307339_110346 | Ga0307339_1103461 | F070165 | MIASLTSRLTTKSLGRFQNRLLGSLTGFQVPADPGLSKRTEMVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH |
| Ga0307339_110434 | Ga0307339_1104341 | F051952 | TIAPDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN |
| Ga0307339_111153 | Ga0307339_1111531 | F070158 | QKMADATYYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY |
| Ga0307339_111263 | Ga0307339_1112631 | F052619 | FTRRKWYPTTTINKKERAASRRVSQKKSPTKQLTSQVMKSPVYRPVYKFTRVSEDASFNIVCDGINPTLSAFIFMLSQVPNSTDFTNLFDMYCLKKIEIDWVPEYTELTDAAPLSNAVNVRVNSAIDLTDNLAPASVNEVLQFQQLVSTGITKPHKRSWQPTFLMGGLVPCSCWLPTSSSTERHYGLKIGVPPTGVAMTLRAKVKYFVECANVN |
| Ga0307339_111873 | Ga0307339_1118732 | F103316 | MHRIIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNKTLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGDKLTAWLQKLFIKKRYKV |
| Ga0307339_114227 | Ga0307339_1142272 | F098317 | LQQRKWSEMARALRLGLTLSEEDAKVFWQSEEAYAVTPQQKLQLKEAQRIYQSHPIKF |
| Ga0307339_114650 | Ga0307339_1146501 | F062800 | TYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307339_115571 | Ga0307339_1155711 | F036251 | MSAKERQTVLFGDTGVTTPIDTTDRVRLSDGMVFVAQKIEVRPSNAYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFLTMV |
| Ga0307339_115571 | Ga0307339_1155712 | F040648 | REGVTALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKDALKNASQEQIERAYAILSGQEAVEAVPAEGGEE |
| Ga0307339_116212 | Ga0307339_1162121 | F025291 | RKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307339_116325 | Ga0307339_1163251 | F020363 | LTFGGMCCWRRFGVARVFALVMRCRVMRLVVNSRVGKNRDTRRESPAGAGAGRTADHLTILFSQKVLAVRKGNDLYRPVMGRYFFMIL |
| Ga0307339_118851 | Ga0307339_1188511 | F068879 | MHNRSVYVIGAPWRDNWVTKEEGFVAGATACPGCRRGLPPGVTVFANARI |
| Ga0307339_119360 | Ga0307339_1193601 | F070165 | TSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSGLDVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV |
| Ga0307339_120082 | Ga0307339_1200822 | F103498 | MDSIESCELQHCRLRTDILCEVQRREEKQDERFYALIDELRLGWKETKKEVISIKDTMIQGFIALIVAVIGVYVSYLLLNVNGFF |
| Ga0307339_125421 | Ga0307339_1254211 | F097599 | EEMDDESKGLLKRIADALTKTPEPVQHVNLTEFENLKKELDAEKAKTAELVNLKQEIATLKAEKATAEKDAKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQQAEGTGATGGSGDAESTEEQKFANMAAEVAKATGIQFV |
| Ga0307339_127362 | Ga0307339_1273621 | F092121 | MPKHFYTLLIIPHKKKDSVKKFLATPRHFRLATTLLVALFCFLGYCAVDYLTIKLEQMELFNLRRLTSTQQEQIDTLEGKITFFERKLAELKQVDEKIRTMAMDLAGKPRKASR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |