NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028723

3300028723: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Val1 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028723 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0321347 | Ga0307360
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Val1 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33507177
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin0801
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus aciditrophicus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin0382
Not Available2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.BinA1791
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012026Metagenome / Metatranscriptome284Y
F020363Metagenome / Metatranscriptome224Y
F021795Metagenome / Metatranscriptome217Y
F022205Metatranscriptome215Y
F022683Metagenome / Metatranscriptome213N
F028541Metagenome / Metatranscriptome191Y
F029768Metagenome / Metatranscriptome187N
F031111Metagenome / Metatranscriptome183N
F043478Metagenome / Metatranscriptome156N
F049736Metagenome / Metatranscriptome146Y
F058971Metagenome / Metatranscriptome134N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307360_100045All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin08010261Open in IMG/M
Ga0307360_100110All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus aciditrophicus7668Open in IMG/M
Ga0307360_101185All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales2720Open in IMG/M
Ga0307360_102200All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin0381958Open in IMG/M
Ga0307360_105605Not Available1141Open in IMG/M
Ga0307360_110272All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.BinA179785Open in IMG/M
Ga0307360_111680All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium724Open in IMG/M
Ga0307360_114157All Organisms → cellular organisms → Bacteria642Open in IMG/M
Ga0307360_117094Not Available570Open in IMG/M
Ga0307360_117575All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038561Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307360_100045Ga0307360_1000452F020363VARVFALVVRCRVMRLLLYYRVGKNRDTRRGSPAGAGAGRTADHLTILFSQKVLAVRSANDIYRPVIASAVNSILR
Ga0307360_100110Ga0307360_1001107F043478MDPYDGHSAWKFQYSHPAGTGVKGRRISLLSWLANLIFLSGTLLFAYQLYGWFEYNEWTRYPSIALVKYVPAGAFGFLNEAAGVKAFAMWILDRADLSVLLILMGFFTA
Ga0307360_101185Ga0307360_1011852F021795MKKEADRVRRWREKKKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAVIMEKALTSLKRQAYTPPVLRHFPRREEALARAAASPLPPAAPSAGRVGHEGNRQPRILIDDLANYPSLEDIEREQAAKEQSGICNPRSGEGFITRLLRSSTGPFSRKKKWFR
Ga0307360_102200Ga0307360_1022001F028541QREQQGAFMNERERLKLINRLKTARTSEERDEILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA
Ga0307360_105605Ga0307360_1056051F049736RNAKFAYWIIVWGLVFFAFVIVLGMAEIITTRQILLMGQAYFFLLMIGMLLQMIARRL
Ga0307360_110272Ga0307360_1102721F058971MTPNLIINLDIEPITLMWNGQAISLPGTYELVPDNEIKHLHKRVVAVALHERRRVPLYGRVVGKARYGKHSVWLIE
Ga0307360_111680Ga0307360_1116801F031111VRTKRVKKVTGMKNQVLFSIFKNKTRRKKEKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLCKPKLTFS
Ga0307360_114157Ga0307360_1141571F012026MNLKEVQAQTAALIGKRAEAINILHRLEKVEDRFNPKIIAEINGYKQAIEELSKELNRLEVEKGALMEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAARRAREILMEKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD
Ga0307360_117094Ga0307360_1170941F022205AAEQSTTLTANAFGLPLSRPTRPHAVEVRFAHINPVGVRFRVLAGNNEEVYVSPALVAGPAPQVFRATLPRNTDFALYGGTQIVMDFAGPATYAIRLIMAHKENSA
Ga0307360_117575Ga0307360_1175751F022683SLEMMTKGMAMYNRMSRAWTEVGAGSSAEKPEDLLKKWTEAFGGSYNDLFEMYTQPFKMFGMGGQGKEEWENVFAQWQKMFTAMTSGSAPAAGDEFMQFSKSWFEGYSKVCRAWVDSMQKMGETCKNAMTEGDKPDSAMGSLSEISETFMKEWSSFVTEQAQAFFSLWRSRLPAEKKEPKKPKKE
Ga0307360_118572Ga0307360_1185721F029768VLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQTVEYLEFLEQAKVMSSHSLRFMERATEKMNSILQETESKIEQAIKEIEQEQEK
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