| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028485 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116274 | Gp0272168 | Ga0233365 |
| Sample Name | Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C36 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 260506115 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 38.04 | Long. (o) | -122.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003605 | Metagenome / Metatranscriptome | 477 | Y |
| F051619 | Metagenome / Metatranscriptome | 143 | Y |
| F060691 | Metagenome / Metatranscriptome | 132 | Y |
| F086058 | Metagenome / Metatranscriptome | 111 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233365_1000110 | Not Available | 43119 | Open in IMG/M |
| Ga0233365_1094475 | Not Available | 623 | Open in IMG/M |
| Ga0233365_1096198 | Not Available | 616 | Open in IMG/M |
| Ga0233365_1097892 | All Organisms → cellular organisms → Bacteria | 608 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233365_1000110 | Ga0233365_100011051 | F003605 | VAVGDQAQAAGFPLVPDTGEEGRVRWGGREINRTRDLIAAVKALLPIGKPGYRTASGISTGTADPTGGVDGDIYFKILD |
| Ga0233365_1094475 | Ga0233365_10944751 | F060691 | MLMAVEGMDPTLKMIFFAAAVVLFALAAIGYSRGKVSFLAAGLAAFAIPFFWDALAAS |
| Ga0233365_1096198 | Ga0233365_10961982 | F051619 | MNNDINWTQVRIDASINIMNAILSSSIMVFIFQFIFKKQIADIAVEYADKLVE |
| Ga0233365_1097892 | Ga0233365_10978922 | F086058 | RKVGGSSMTTYRAYRVDSRRHIQSAAWLDAPNDAAARAKAAELCDEGTPAVELWQATRLVDEIECADEEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |