| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028326 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046201 | Gp0057198 | Ga0268263 |
| Sample Name | Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 5 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 272182019 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 3 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Lawrence Berkeley National Laboratory, California, USA | |||||||
| Coordinates | Lat. (o) | 37.8754404 | Long. (o) | -122.2477251 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010231 | Metagenome | 306 | Y |
| F014318 | Metagenome / Metatranscriptome | 264 | Y |
| F069434 | Metagenome / Metatranscriptome | 124 | Y |
| F078103 | Metagenome / Metatranscriptome | 116 | Y |
| F083634 | Metagenome | 112 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0268263_1000217 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 130238 | Open in IMG/M |
| Ga0268263_1000263 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 106998 | Open in IMG/M |
| Ga0268263_1000350 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 85721 | Open in IMG/M |
| Ga0268263_1000766 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 38424 | Open in IMG/M |
| Ga0268263_1002186 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 13401 | Open in IMG/M |
| Ga0268263_1015438 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 2058 | Open in IMG/M |
| Ga0268263_1029796 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1141 | Open in IMG/M |
| Ga0268263_1031331 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 1095 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0268263_1000217 | Ga0268263_10002175 | F069434 | MKRIFDKATCWNIFDHAKDPERYWALQHAGLHDAARTAAIFLTLRHPLRMIPVIIACARY |
| Ga0268263_1000263 | Ga0268263_10002635 | F069434 | MKRIFDKTTCWNIFDHAKDPECYWALQHAGLHDAARTAAIYLTLRHPLRMIPVIIACARS |
| Ga0268263_1000350 | Ga0268263_100035087 | F069434 | MKHIFDRTTCWNIFDHAEDPERYWALQRAGLHEKARKAAIRLTLKHPLRMISVIIACARC |
| Ga0268263_1000766 | Ga0268263_100076612 | F078103 | MKVEGIKVLSLVMSIAMVAVIVLSLAGGVGLGYAIIFGILNAFDRSRQLIKAAPTQVLTNSASSR |
| Ga0268263_1002186 | Ga0268263_10021861 | F010231 | NTRLWALAGDVHSGGFAPAFTLSFHDSECSRKPPNAHSLGR |
| Ga0268263_1015438 | Ga0268263_10154381 | F010231 | NTRLCAMAADVQFGGFAPAFTLSFYDSECSRNPPNAHSLGR |
| Ga0268263_1029796 | Ga0268263_10297961 | F014318 | MGHTGESMSDLYDKIKEDVAFRKQWAEKCGFGFELPSIVPNVPKTRAKSKSMKAA |
| Ga0268263_1031331 | Ga0268263_10313311 | F083634 | MDGGANPQINLDHIRIGGRICHLARKLIVTVEYEDDRLTFSNEEFGLVVSAETLEEGIAGLSGELAVLWEVYVGADPANLTADALRLRNNLTTLVPAGVSP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |