Sample 3300028254

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300028254

3300028254: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3U

Overview

Basic Information
IMG/M Taxon OID	3300028254 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133511 \| Gp0294657 \| Ga0256370
Sample Name	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3U
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	31124011
Sequencing Scaffolds	2
Novel Protein Genes	3
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Extreme Environments Viral Communities From Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → brine
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Location Information
Location	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023447	Metagenome / Metatranscriptome	210	Y
F023593	Metagenome / Metatranscriptome	209	N
F052606	Metagenome	142	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256370_111874	Not Available	661	Open in IMG/M
Ga0256370_117603	Not Available	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256370_110480	Ga0256370_1104802	F052606	KPILLGQGDQISQFGNYTLDTYAVDPIDPFYYIANLTYLGGNGIIAPQGTQYTLIHFDITSSGDVNLKQNFGSSLQWVINNTTGKAEPSVTLTDNSNPPEEIKGCITYTNATTITVDFDKAISGSSILN
Ga0256370_111874	Ga0256370_1118741	F023593	MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYK
Ga0256370_117603	Ga0256370_1176033	F023447	RRLMAQVGNAKFGMALANKNGFLNADGSLSAKGIARNGMTAEGRAIDRAGGTGVYNASTNSVTQY

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.