NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028245

3300028245: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300028245 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133460 | Gp0294622 | Ga0256333
Sample NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19956699
Sequencing Scaffolds17
Novel Protein Genes20
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1
Not Available9
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM011
All Organisms → Viruses1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000860Metagenome / Metatranscriptome857Y
F001360Metagenome / Metatranscriptome714Y
F008243Metagenome / Metatranscriptome336Y
F020700Metagenome / Metatranscriptome222Y
F021968Metagenome / Metatranscriptome216Y
F022160Metagenome / Metatranscriptome215Y
F023855Metagenome / Metatranscriptome208Y
F047662Metagenome / Metatranscriptome149Y
F048103Metagenome / Metatranscriptome148Y
F049019Metagenome / Metatranscriptome147N
F053991Metagenome / Metatranscriptome140Y
F066719Metagenome / Metatranscriptome126Y
F072383Metagenome / Metatranscriptome121Y
F074802Metagenome / Metatranscriptome119N
F076149Metagenome / Metatranscriptome118N
F086577Metagenome / Metatranscriptome110Y
F095369Metagenome / Metatranscriptome105N
F099212Metagenome / Metatranscriptome103N
F104504Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256333_100664All Organisms → Viruses → Predicted Viral1514Open in IMG/M
Ga0256333_100875All Organisms → Viruses → Predicted Viral1399Open in IMG/M
Ga0256333_101828All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1081Open in IMG/M
Ga0256333_101837All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1077Open in IMG/M
Ga0256333_102907Not Available891Open in IMG/M
Ga0256333_103325Not Available849Open in IMG/M
Ga0256333_104273All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01765Open in IMG/M
Ga0256333_104411All Organisms → Viruses755Open in IMG/M
Ga0256333_104738All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage732Open in IMG/M
Ga0256333_105504Not Available688Open in IMG/M
Ga0256333_105560Not Available686Open in IMG/M
Ga0256333_105667Not Available681Open in IMG/M
Ga0256333_106196Not Available657Open in IMG/M
Ga0256333_106752Not Available634Open in IMG/M
Ga0256333_106797Not Available633Open in IMG/M
Ga0256333_108352Not Available582Open in IMG/M
Ga0256333_110763All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256333_100664Ga0256333_1006643F095369VAYYIRDGELVPVAIPLNQRVKIGKYYEPPQLSYLSNDQLWIQDVYVFKQIPWYKIKNRYERYLLYATLYGAIVVMLTMIGRYWLGAPN
Ga0256333_100875Ga0256333_1008751F000860MLPKILSQDSNYDEWCEQEILNAYKEAAECDEFMFGDYDFCKEWLGE
Ga0256333_101197Ga0256333_1011972F099212MTQRWERAKGLLGDEFLGEVFAELEKDNIERIINSSPDDIDLREESYVAIRAVRQVKARLESVAAEGEIVKRRFRIFK
Ga0256333_101828Ga0256333_1018281F049019MRTSRKLTHVLFAVFTLAIMSMAALAADPGTSLPASSQASDQKQGSLLIYSHYGSVTSNVSANDTRINITNTHVTSSVVVHFFFVSQGCSVADFKTELTQSQTYSFLVSDFDPDTVGYIMAVAEAEDGLPIAMNFLIGDLFVKSSTGPFSANLGAIAFAAQWTGANNGNDPNESGFWRIPGGDATTPSVNITFGSSGNYNALPRTLAVDNIPSFAGGDRALLILLSPVQSFVTGGGSVGTLFGLLFDDAEQSQSFQINGGSCQSTNIISDSYPRTAPRFTTVVPAGRTGWMKVYKTSDLGILGSVIVYNIGGRDVNFHGGHNLHALTLAGATTTQTATLPVFPFELQTN
Ga0256333_101837Ga0256333_1018372F076149MNKLLLTTLGMVAAVSAAYAQGTFNANNNFTPAGASAKAFVLGLDGNPLAKANGRVEILSGGTSLSPNGSAGVALTLDGLFFINGLVAPGAGLGGTANLVVRAWDVTTGATYADATTRGSVNVVISSLGGGTTPPATFGNNSDFKGLKLEGGGV
Ga0256333_102907Ga0256333_1029074F074802MTKCTCSYIQIGTKTSNSKNLNPDCPLHGTDSVWYNSPEQVNKRKDRSQRLRELYDAARKAREKQK
Ga0256333_103325Ga0256333_1033251F021968SLAEGVDFSTEEEYKEKLDTIRENYFPTGVKKASVEQLHEKIEDAETGDKKVVDPFVAAVSSAISKTRI
Ga0256333_104273Ga0256333_1042732F047662MHYETDIIIHQYSSDGDFYYKLKVTDVMNMDYYYEGSASTLDDVMECIQ
Ga0256333_104411Ga0256333_1044111F066719FLTATIITCSDALSVIQRISKVVGLTEVQRTEIIQEIRKVIPSCPVKVVKQ
Ga0256333_104738Ga0256333_1047381F001360AKFRKVGTKTGAGRLVVSEGIAPAAYLLPAAGLPTWYLDSEDDRFEIVIPKGTILSVVANASTGDAEVAPANGTGSSVTWGDSMPSSWDPMDGATPSYSSGATDTVVVPARSVPVGVAQYDLYRPFDKGTSQGAGFITHGYVEYPMVDGINADVTVGSVVRADHMGRPVKAAAADFYNSSAVYSYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVFELTRSGTYSGKLGIRSNLDVH
Ga0256333_105504Ga0256333_1055041F086577RENLLAPLEELQARAEALKQQAQNGSVLLLGTVVDSLKINGLNSKVLNPGVAGLPDFGSFGLTDLTIEMAAPANGSSFSRLTTLGATVIATQGWTLVGDVRVVSFAFSVLMETDVAGNRKFSGSVQGSVALNSKMTFGLYVPFNKPGSSVEFVLPELVVSGVNVNELFGLGTQVSVTDMASVESAVGKASEEIKARIKAELAAKVEQAKQQAKQLVRENLLAPWRSCRH
Ga0256333_105560Ga0256333_1055601F022160WDGAPNYLLSTMTLAYSWELARVTGPVSGVYSVSIVHNMGYHPNVTVKSSAGDILETGIDYNSINQITLTMAQPFSGTAYLS
Ga0256333_105667Ga0256333_1056672F023855VIQYDGNLKTERYGEVRVVSLSSFIKLYQEFGIEGVQKYGGRDVTESSLVSGCSKDNLAGRRATTFQIRNQTNFVKAV
Ga0256333_106196Ga0256333_1061961F072383KVTITYHDNESYTVEEVVKQALHNYGRSAQVEVMPESTMAYDHIYFGLQQLITH
Ga0256333_106752Ga0256333_1067521F020700MTVRLSLHLRFARLCPRTSRGVFSDAAAGIAATSNGLNFTVPFQAVKPEK
Ga0256333_106797Ga0256333_1067971F048103VGRQIEVGTPIGITRRDIAKHEIIQFHYCVFQYQRVLKTERYVNVRVVPLLSLINSYQGVDLEVILKYGNGDISRSS
Ga0256333_108352Ga0256333_1083521F086577QMRQQATNGSVLLLGNVVDALRLPGFDSKVLNPGVAGLPDFGSFGLTDLVTEFAAPANGSSFSRLQTLGATVIATRGWTVVGDVRVVSFAFSVLIETDGAGNRKFSGSVQGSISIGRFTFGAYVPFNKPGQQMEFMLPVVTVNGVNVNELFGVGTKVGVSAADVNDLLSTDGAEIKARLKAELAQKSAELKAL
Ga0256333_108637Ga0256333_1086371F104504QISITGNQTFNLMTTSGWLFKILDQDSDGYLTFYDFGSFMQISYLFNKFDPYSKGRIVAGNLYEKYTAYSDLPYVSATLRERAKRFNLFPQDLYFDLMRAVLVLRIDDLIIANARRVDPTTLYEVELKTIFSLVNLAAVPDAYLNKCLRGADDNNVPKYDWECALIQGVTTTLNYLESANSYTTAKMQNL
Ga0256333_110739Ga0256333_1107391F053991LADVNAEIGVNIDTSGALAQLKALQREIARFHASVAKSSDAAALAQRDLQKNFINGVNA
Ga0256333_110763Ga0256333_1107632F008243MLPLEQEIQAISEQYKMGNISEDERNYLLTEIRDIRAAQECAGNEQAFRYVVQACNIAMAVV
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