NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028122

3300028122: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3M



Overview

Basic Information
IMG/M Taxon OID3300028122 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133511 | Gp0294658 | Ga0256371
Sample NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SI3M
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size41533276
Sequencing Scaffolds25
Novel Protein Genes28
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses1
All Organisms → Viruses → Predicted Viral4
Not Available14
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameExtreme Environments Viral Communities From Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → coastal water body → brine
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000637Metagenome / Metatranscriptome969Y
F003058Metagenome / Metatranscriptome510Y
F003647Metagenome / Metatranscriptome475Y
F004988Metagenome / Metatranscriptome416Y
F007945Metagenome342Y
F008307Metagenome / Metatranscriptome335Y
F008695Metagenome / Metatranscriptome329Y
F010368Metagenome / Metatranscriptome305N
F011798Metagenome287Y
F013049Metagenome / Metatranscriptome275Y
F023212Metagenome / Metatranscriptome211Y
F023447Metagenome / Metatranscriptome210Y
F023593Metagenome / Metatranscriptome209N
F033250Metagenome178N
F037765Metagenome / Metatranscriptome167Y
F038862Metagenome165N
F039337Metagenome164N
F044145Metagenome155N
F049627Metagenome / Metatranscriptome146N
F049645Metagenome / Metatranscriptome146N
F055205Metagenome139Y
F055714Metagenome138N
F058516Metagenome / Metatranscriptome135N
F058909Metagenome / Metatranscriptome134Y
F082818Metagenome / Metatranscriptome113N
F094394Metagenome106N
F097149Metagenome / Metatranscriptome104N
F103918Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256371_101838All Organisms → Viruses2332Open in IMG/M
Ga0256371_103674All Organisms → Viruses → Predicted Viral1691Open in IMG/M
Ga0256371_104050All Organisms → Viruses → Predicted Viral1608Open in IMG/M
Ga0256371_105782All Organisms → Viruses → Predicted Viral1311Open in IMG/M
Ga0256371_108039Not Available1069Open in IMG/M
Ga0256371_108205All Organisms → Viruses → Predicted Viral1055Open in IMG/M
Ga0256371_109498All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium959Open in IMG/M
Ga0256371_110799Not Available874Open in IMG/M
Ga0256371_110869Not Available870Open in IMG/M
Ga0256371_110966Not Available864Open in IMG/M
Ga0256371_112526Not Available789Open in IMG/M
Ga0256371_112715Not Available781Open in IMG/M
Ga0256371_117163Not Available629Open in IMG/M
Ga0256371_117482Not Available620Open in IMG/M
Ga0256371_117579Not Available617Open in IMG/M
Ga0256371_118225All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium598Open in IMG/M
Ga0256371_119112Not Available577Open in IMG/M
Ga0256371_119289All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium573Open in IMG/M
Ga0256371_119571All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium567Open in IMG/M
Ga0256371_119953Not Available559Open in IMG/M
Ga0256371_120767Not Available543Open in IMG/M
Ga0256371_122305All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203515Open in IMG/M
Ga0256371_123064All Organisms → cellular organisms → Bacteria503Open in IMG/M
Ga0256371_123170Not Available501Open in IMG/M
Ga0256371_123243Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256371_101838Ga0256371_1018387F013049MQQDVETQFHTIDLFIRSILDDMRKVSMSTKKADTMAYIDAWKTE
Ga0256371_103674Ga0256371_1036741F023593MSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDIVDIDYYKQNTIISG
Ga0256371_103674Ga0256371_1036743F058909MKLTNVEKNVLLVALDHMEEHIVDLMKERELRGVGFDVWKERLNSCKTIRIKLK
Ga0256371_103674Ga0256371_1036745F008695MIKEYEISKVTHEWCESNDRWIYIEYNAQRKIIGLNFMQGDEYDYFKAKWCHNDQALMQFYGTMLYTFPIEKASVNTLEFINKVMWSYHSAIVANEDHSDYGEGLRDQS
Ga0256371_104050Ga0256371_1040504F082818MATNIRTVNKRGGDGVIIATNGRTRVLGVHSYSTIAGVIAIGDKTGAVITYEVPASAESDMYFGEMGVLCSATVTISTPNAGSVTLITG
Ga0256371_105782Ga0256371_1057821F003647GQRIIMVMCEWTLADVKNRASNKAFAKVTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ
Ga0256371_105782Ga0256371_1057825F003058MDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADIEFGTITEDEIIAEELVKLQDRLNQLETKEDYEAASIVANKI
Ga0256371_108039Ga0256371_1080391F023447METQAFMGTGELIPRLMAQVGNAKFGMALANKNGFLNADGSLSAKGIARNGMTAEGRAIDRAGGTGVYNASTNSVTQY
Ga0256371_108205Ga0256371_1082053F058516MSNARHCASCGKKYYPKAWNSYPEDDYIYDNGETTRFVVRPQDKRFHSLGCMKEFIARNSMAFANLVDSVSHNVIEDINNQTIEKG
Ga0256371_109498Ga0256371_1094982F000637MSHASDATKAWVSAIPKKNADGNVIEWSVQYKYTKTTHPHTFSGNVKIDTPSKAPGSYTKAEILALFDVAHWDDMYNKKYTVWTADAVVETTDSSFDVTSLSDS
Ga0256371_110799Ga0256371_1107992F011798MNIKDVDKWVETAEIGSSVIYYTGNLSEDRCYAGTHFAKDVADIPKAFAAHAENKTIEFFQKRKTKMDKSKTPKRPIFDYIARKIA
Ga0256371_110869Ga0256371_1108692F049627MKQIILLAGLLTATATPPTKLYEVTHLIIESSTAVDVWSSGHFVRTDIQVTPDSIHYFEAIGKHNKMIKTESTDYSDVLSITDSSLTVQQTDQVITYLLFNLQNHYE
Ga0256371_110966Ga0256371_1109664F055714MSKWTSTSVVINSATEEMVKSALKDGWNFEVLTEGEHLCEESTDFDEIMENIHAVDGILEIHIHKVGEESDWCNVILHNGDPDCEISDCTSDGYIDKWTERTDFGQKTWNDGFK
Ga0256371_112526Ga0256371_1125262F033250MDVKLTTTRQLSPVFDEGGQIDLEALRPLLEQHAATMVSDAQSGWPVDTGISRAAWTAEIDVSPSQLFVSLINEARQRGRGYAVYIHRARSPRLVYTEVEERFTLNLIPALQADIALTLAESMRG
Ga0256371_112715Ga0256371_1127152F049645MKKLFTTLSILFITLTTQAQKQFEGEWVSKTSSHVTTIIASDYAVLKVFNFSFKEDSYIEEKILVQTDYEFTTRLYNSRNGYTAIVKYKMKGDILICEFSGDFHGIVELTKKE
Ga0256371_117163Ga0256371_1171632F094394MIELLLFLFTDVDNRMGNFHTVKHKFNTYQECNDYIKEHTIEENIYTPTGQVIGLTYCKPIDTDK
Ga0256371_117482Ga0256371_1174822F055205HMSNLDLIKAERKQWRENTILNSIAIRKLAVELDTVRKQKDELQEKLNNINKISIIENGKTNLADDQIKIK
Ga0256371_117579Ga0256371_1175791F039337MSLIVHYNTMSKYNEETFKAEDRDQADTLGWMLMGTGISEITEKTIPELLFRVRFMDFSYGKPYFTSDPSDEQIITLFKAHLGLKIEITNRGIRNLNTRRRFMVNQLDNMERRIERKIAKVQ
Ga0256371_118225Ga0256371_1182251F004988VPKLIETICPRCDGNGFIKIPPVIATVGDKATEMDCPMCEEIITHMGQRITTHNGYVMLPIEHTRKNVEGGRESKIKWSGETLPEVGK
Ga0256371_119112Ga0256371_1191122F097149MSGWLALMAVTYVLYVMFERGSISSPYKKDIKLSVDDPNLEDKIRKKYFEEN
Ga0256371_119289Ga0256371_1192892F010368SHLQDTTTIQFVSRKNGAGTSFDMPITLLDSTLPTQTATQQVIPTNSVRLGFVFEPAGTDSGQTVGQYKIYMNGNIVGTQSATTVPDDTALEMNIMCAHKGTAANHLVVDYFNTVQSRVSGTSVTA
Ga0256371_119571Ga0256371_1195712F037765MTTHFSNGVTNVRGKSGGTSLFSSIKQPLITGGYEQEQAYQNDFNVFNPSDYETVTSTGASDFQLAQFAGGWLRQGDNAPAAGEIQGVAGYDVWNYSDTKKWMFET
Ga0256371_119953Ga0256371_1199532F103918MWVLVWMQLMTGMPLQYYQLNSFESRTLCEQYKEQAKILVTNTNMTVACLNVRIQK
Ga0256371_120767Ga0256371_1207672F007945MMSIIKGHTSIFQLIGDAYSKKDVQRFYYAYQLCVRAKTNMKVLHKYLINRHNFTRIDCANLLRSARIVK
Ga0256371_122305Ga0256371_1223051F023212TEEGWDVHDPGYYDEMSKRLKSSGLTYFNKSEENTSKAAENVVQKNNRVQSPVAGVSRKTGTSGNRVKLTSDDLSTAKTFGIDISDEVALKRFAKEVKSFSDTGQ
Ga0256371_123064Ga0256371_1230641F008307MVKVLKQSSLEISADVEEFFDGETIEEATKKAHYQIMPGELAKINITDNKFVKATIKVVGEEHDYESKQ
Ga0256371_123170Ga0256371_1231701F044145MSALVAKLQEQYEDQYQRSITPVELRQLNSVESTFTLNKPSYAVLDTDNNKAIHLHGANYQLIPYERILSGLSTALDKYEIDISDTSIKFNVSPD
Ga0256371_123243Ga0256371_1232431F038862MSDKAWHISYLSAIVGPCAATTDDGCMAWEDEEKSDFVMRLLDRDNDGKNLLVVIQPEMNELALYTVTGYCVANDLPYMIKDWDALSAEG
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