| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028121 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133511 | Gp0294656 | Ga0256369 |
| Sample Name | Cryopeg brine viral communities from Beaufort Sea near Barrow, Alaska, United States - CBIW |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 16890292 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Extreme Environments Viral Communities From Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → area of sea ice → brine |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 71.2944 | Long. (o) | -156.7154 | Alt. (m) | N/A | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017294 | Metagenome / Metatranscriptome | 241 | Y |
| F077781 | Metagenome / Metatranscriptome | 117 | N |
| F091749 | Metagenome / Metatranscriptome | 107 | Y |
| F099974 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256369_100021 | Not Available | 24130 | Open in IMG/M |
| Ga0256369_100048 | Not Available | 10724 | Open in IMG/M |
| Ga0256369_100237 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 3493 | Open in IMG/M |
| Ga0256369_103508 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan | 940 | Open in IMG/M |
| Ga0256369_104891 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 780 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256369_100021 | Ga0256369_10002113 | F099974 | MGAERKKLATVSYVTDTDVSYYEIGETEGSFQEEELKDYIKSFGHEKLCSQLAFMQFQIWKTLRKINGENNNEQAKSCVKE |
| Ga0256369_100048 | Ga0256369_1000485 | F099974 | MGAERKKLATVSYVTDTDVSYYEIGEAEGSFQEEELKDYIKSFGHEKLCSQLAYMQFQIWDALRKINGENNNEQAKSCVKE |
| Ga0256369_100237 | Ga0256369_1002372 | F091749 | MIKTDENYNAQSWELEIDCKNKEYLDEIVGAVLKYGMISFEVEVGDCITSHEKWDSRYSVLIWCSWFHNLSDLAKDLKKIEKRLEK |
| Ga0256369_103508 | Ga0256369_1035081 | F077781 | ILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT |
| Ga0256369_104891 | Ga0256369_1048913 | F017294 | NLKMTTRQMHLDKGPTGMASSTACGRNILRTPLSASWAEFKAEPVAYRCIKCNTSKQFEVNTRMDAKKETK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |