| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028042 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046784 | Gp0296314 | Ga0256844 |
| Sample Name | Mussel associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Mussels |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 626608301 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 8 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mollusca → Shell → Unclassified → Unclassified → Mussel Surface → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Pacific Ocean: East Pacific Rise | |||||||
| Coordinates | Lat. (o) | 9.8441 | Long. (o) | -104.2967 | Alt. (m) | N/A | Depth (m) | 2503 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037755 | Metagenome / Metatranscriptome | 167 | Y |
| F055744 | Metagenome / Metatranscriptome | 138 | Y |
| F059475 | Metagenome | 134 | Y |
| F079616 | Metagenome | 115 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256844_10000597 | Not Available | 13829 | Open in IMG/M |
| Ga0256844_10066795 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 1223 | Open in IMG/M |
| Ga0256844_10255625 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia | 573 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256844_10000597 | Ga0256844_100005973 | F055744 | MTNYGNGFNWTELYHMPIHWRRFYFNKLLQSKKKEKEEYDKSNNNGSASRPPLRVKK |
| Ga0256844_10066795 | Ga0256844_100667951 | F037755 | MAHDVSEYLQFVARAKVPDTKVMIYMAIVIFSFFFPFSYMYTKYHFVNCLSHRFEVYAVKNGGYKKFREKMFKTHKIPGNWHGNYT |
| Ga0256844_10080016 | Ga0256844_100800161 | F059475 | MDNPEILTTYGTQNKDEEKQNKNTTQYVLDTIMRKQPQIT |
| Ga0256844_10157276 | Ga0256844_101572761 | F059475 | TKDNPKKLATQEEEKQNKNTTQYVSDTTIHKQTQIT |
| Ga0256844_10217196 | Ga0256844_102171961 | F059475 | MDDPEKLETWGTHDEYKQNKNTTQCAMDTTMRKQTQ |
| Ga0256844_10229369 | Ga0256844_102293691 | F059475 | MDNPEKLAVYGTQDKEKQSKNTTQYVLDTTICKQTQITLIKVRE |
| Ga0256844_10255625 | Ga0256844_102556251 | F079616 | MENTFEIGEIVVCVNARRNWYKLGGLKRDEMYTVIGFNPYDDGLILKEVKSPGSGCHAFAAERFRKVDYNFAENIIEELQSQKEFQITKS |
| Ga0256844_10319782 | Ga0256844_103197821 | F059475 | MENPEKLATFGTQDEEKQNKNTTQCVLDITIHKHTQIT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |