NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028038

3300028038: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-E_N



Overview

Basic Information
IMG/M Taxon OID3300028038 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133410 | Gp0290881 | Ga0247711
Sample NameSoil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-2-E_N
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size40120856
Sequencing Scaffolds3
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomehillsoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)32.5788Long. (o)-110.8509Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038611Metagenome / Metatranscriptome165Y
F048859Metagenome / Metatranscriptome147Y
F067309Metagenome125Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247711_100229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3990Open in IMG/M
Ga0247711_103919All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1246Open in IMG/M
Ga0247711_107872All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia866Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247711_100229Ga0247711_1002295F067309MSHVIGRPNDDILEVMLGPGADPEQAFIGGSAQGVEAGDGVEDRPPDDKPTAAD
Ga0247711_103919Ga0247711_1039191F048859VAEQPIPFSELLAGYGTTTIGEGMRIESVFALLKLRSSDASVAWSVRSGGTPLTMEELLGVLDGLTTSLRQRLTRAWKRTAADAPAGTTGGRGGPPTPTSFSELLAGLETVGVIDDYLIETVFAVIKARRGDGAPVW
Ga0247711_107872Ga0247711_1078721F038611VAWMQIMGADSVDYHRTTVLARGDDHPGQALAYYASRGRRWRR

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