Basic Information | |
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IMG/M Taxon OID | 3300028011 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0306251 | Ga0265344 |
Sample Name | Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE1 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 22795068 |
Sequencing Scaffolds | 19 |
Novel Protein Genes | 23 |
Associated Families | 23 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Predicted Viral | 1 |
Not Available | 9 |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → cellular organisms → Eukaryota | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria | 3 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → valley → plant litter |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Norway: Oslo | |||||||
Coordinates | Lat. (o) | 59.9979 | Long. (o) | 10.7895 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000247 | Metagenome | 1464 | Y |
F000746 | Metagenome | 908 | Y |
F002220 | Metagenome | 581 | Y |
F003931 | Metagenome / Metatranscriptome | 461 | Y |
F004318 | Metagenome / Metatranscriptome | 443 | Y |
F004883 | Metagenome / Metatranscriptome | 420 | Y |
F004934 | Metagenome / Metatranscriptome | 418 | Y |
F007705 | Metagenome / Metatranscriptome | 346 | Y |
F008074 | Metagenome | 339 | Y |
F009429 | Metagenome / Metatranscriptome | 318 | Y |
F017942 | Metagenome / Metatranscriptome | 237 | Y |
F018655 | Metagenome / Metatranscriptome | 233 | Y |
F030264 | Metagenome / Metatranscriptome | 186 | Y |
F035000 | Metagenome / Metatranscriptome | 173 | Y |
F035852 | Metagenome / Metatranscriptome | 171 | Y |
F041888 | Metagenome / Metatranscriptome | 159 | Y |
F053416 | Metagenome / Metatranscriptome | 141 | Y |
F057536 | Metagenome / Metatranscriptome | 136 | Y |
F060143 | Metagenome / Metatranscriptome | 133 | Y |
F061712 | Metagenome | 131 | Y |
F067942 | Metagenome / Metatranscriptome | 125 | Y |
F077550 | Metagenome / Metatranscriptome | 117 | Y |
F083206 | Metagenome / Metatranscriptome | 113 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0265344_100472 | All Organisms → Viruses → Predicted Viral | 1051 | Open in IMG/M |
Ga0265344_101072 | Not Available | 767 | Open in IMG/M |
Ga0265344_101397 | All Organisms → cellular organisms → Bacteria | 701 | Open in IMG/M |
Ga0265344_101419 | Not Available | 698 | Open in IMG/M |
Ga0265344_101507 | All Organisms → cellular organisms → Bacteria | 683 | Open in IMG/M |
Ga0265344_102283 | Not Available | 599 | Open in IMG/M |
Ga0265344_102312 | All Organisms → cellular organisms → Eukaryota | 597 | Open in IMG/M |
Ga0265344_102525 | Not Available | 582 | Open in IMG/M |
Ga0265344_102689 | Not Available | 570 | Open in IMG/M |
Ga0265344_102697 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 569 | Open in IMG/M |
Ga0265344_102765 | Not Available | 566 | Open in IMG/M |
Ga0265344_102896 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 558 | Open in IMG/M |
Ga0265344_103302 | Not Available | 536 | Open in IMG/M |
Ga0265344_103434 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium | 530 | Open in IMG/M |
Ga0265344_103804 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 515 | Open in IMG/M |
Ga0265344_103877 | Not Available | 512 | Open in IMG/M |
Ga0265344_104021 | Not Available | 507 | Open in IMG/M |
Ga0265344_104079 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 505 | Open in IMG/M |
Ga0265344_104210 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 501 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0265344_100472 | Ga0265344_1004721 | F000746 | GIININYKVIIEVLIEVYFKVITRKSAMFIRSQITS |
Ga0265344_100472 | Ga0265344_1004722 | F008074 | VVVIFKGELKSARGLLVYLVVIAVLYKILNCLNLNFIAYLLKNPK |
Ga0265344_100883 | Ga0265344_1008832 | F060143 | MRSKSGFISSLLLTAALAAPVAVMATRGPQEASVQVRVYDKNHKDY |
Ga0265344_101072 | Ga0265344_1010721 | F002220 | RKAIESLFRERIYLLKSNSIIKLSFSFSFTIRFAFTSSSSLRAKNWLSPKIIILLVYMPTILNRVPIVIIRKYRLNIEVVIKSFSL |
Ga0265344_101397 | Ga0265344_1013972 | F053416 | MPTPSYQSRPKASRAGLLLLALLLFRAYIPVGFMPASGVPFALQLCPAGTEMPAHLHHHAGGHGDFESCPFGSAPGAAPISQHIDFQTPGPAPSLRMASPKTPLLVHRSQSTHQPRGPPSLA |
Ga0265344_101419 | Ga0265344_1014191 | F077550 | YAAETLCESAATWGKKEGSACVQKAVNDAVARVNAPLLTQYSQLRSKGDKGGLVQLAKTN |
Ga0265344_101507 | Ga0265344_1015072 | F007705 | SHVCRGIGIHAIDIVQPPGIGIPRFPDMDPHQAIVIAAHEAKSSAEMQRKVRGEPRSDSLQHIPL |
Ga0265344_101738 | Ga0265344_1017382 | F018655 | VVDSIYIVVDYLYRVVDSLCRVMDSLYRVVDSLYRVVDSLYRVVVSLYRVVDSLYRVVDSLCIVVDYLYRVFDSFYRIVDSLHRVVDS |
Ga0265344_102283 | Ga0265344_1022831 | F061712 | IYYTRIAALKITGFPIIIIYRVRVVSFKITSLTIAIIKLRSFLKRIISLYIASR |
Ga0265344_102312 | Ga0265344_1023121 | F017942 | YRVVDSLYRVVDSLYRVVDSIYIVVDYLYRVVDSLYRVLDFLYRVVDSLYRVIDCLYRVVDSLYRVLDFLYRVVDSLYRVMDSLYRVLDSLYRVLEFLYRVVDSLYRVVDSLYRVVNSLYIVVDYLYRVFDSLYRVVDSFYRVVDSF |
Ga0265344_102343 | Ga0265344_1023431 | F067942 | AIGGWAFHKIPDGWKIQEGLGIQQIVTDAFPATIGAMEEPLGPGLTLQHYVDAHTKMFREYLRDPKIDIASPSAIRGSEETVALEIRYSLKDGPPIYYRRVYVRCGSIVGVLTLTTLEKDLPSVRPLYDSVVSAITFTR |
Ga0265344_102525 | Ga0265344_1025251 | F003931 | LFADGFTGDRSGFALVELPVGSTKFVTVKTSNAPEFPGSVQWDGTYLTVFDQYTASTYQYAVSGTTATLKNTIQFTGASDCAQTWIVKGLLYCGDAGTNGGEVFKYPDGGSPIATFTGNFDFPLGVTAAKK |
Ga0265344_102689 | Ga0265344_1026891 | F035852 | QAMENSILYTFSTIAQALGGAFALLSAFVLFRFQSLDASMLNASLGLRCIWKSKADLESYDTLRGLSIWPSLNKAIEAQIARMIAVHETPSFEVMATKTRLKAGESLHSFLTVVFWVAVSLTFVVMTSSVAIIPYAHDIIETHTAKWIHWLNLGGVVAFGLCMISYMAVIYSALLSRYGKDIIQPRIDA |
Ga0265344_102697 | Ga0265344_1026971 | F057536 | VSTEFLDRLASQLKIGKGPASRRAIERILDITKTGYENGEYENPVEAERDFRRLVSLQE |
Ga0265344_102765 | Ga0265344_1027651 | F004318 | MVSYVVSYLGLGLVLGTELVLDLGLGSLSILFIVGY |
Ga0265344_102896 | Ga0265344_1028961 | F083206 | RQSRLLADIVAKVFSGWRTKILRAAEAFYARRREGPYRFIQNRSRTSVVALKRDTEAEKSEDQLSRDF |
Ga0265344_103302 | Ga0265344_1033021 | F000247 | VHTNAINTTLSYKRIPRIEVAYTNYLTSSLNTFIDKTLVPGFSALFAYPSIDRKLYYNGSLSLDESIDLTSTDL |
Ga0265344_103434 | Ga0265344_1034341 | F041888 | MRKRSTLFLSLLVPAFLGLGGYAVLKAQQKTSTASATRWSDAATWPD |
Ga0265344_103804 | Ga0265344_1038041 | F035000 | RMDELLRKAEEMGLNYDEKTELSLLLKSKGRPQARS |
Ga0265344_103877 | Ga0265344_1038772 | F004934 | MPSLTAKDRISLCLFSYEDGRRCRTPRISSHPHFCFYHAQKESQSQTAEKLAKELAYFF |
Ga0265344_104021 | Ga0265344_1040211 | F030264 | MSDFQDPINHTTTGTPRWVGLAVAVLGGVSLLGLGVGWSALNHANSIEQSTQASVKQSN |
Ga0265344_104079 | Ga0265344_1040791 | F009429 | MMDTEAFREFKTGLTLLRDNYAVKALPHMKKAVDLDRNNPYYMS |
Ga0265344_104210 | Ga0265344_1042101 | F004883 | EIEAAGRAARLELKALAAALAVDGAETLLAKQLTPAAQESLVDMFVKSLEGRPN |
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