NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300028011

3300028011: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE1



Overview

Basic Information
IMG/M Taxon OID3300028011 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128948 | Gp0306251 | Ga0265344
Sample NamePlant litter microbial communities from Maridalen valley, Oslo, Norway - NLE1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22795068
Sequencing Scaffolds19
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
Not Available9
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Bacteria → Acidobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomevalleyplant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F000746Metagenome908Y
F002220Metagenome581Y
F003931Metagenome / Metatranscriptome461Y
F004318Metagenome / Metatranscriptome443Y
F004883Metagenome / Metatranscriptome420Y
F004934Metagenome / Metatranscriptome418Y
F007705Metagenome / Metatranscriptome346Y
F008074Metagenome339Y
F009429Metagenome / Metatranscriptome318Y
F017942Metagenome / Metatranscriptome237Y
F018655Metagenome / Metatranscriptome233Y
F030264Metagenome / Metatranscriptome186Y
F035000Metagenome / Metatranscriptome173Y
F035852Metagenome / Metatranscriptome171Y
F041888Metagenome / Metatranscriptome159Y
F053416Metagenome / Metatranscriptome141Y
F057536Metagenome / Metatranscriptome136Y
F060143Metagenome / Metatranscriptome133Y
F061712Metagenome131Y
F067942Metagenome / Metatranscriptome125Y
F077550Metagenome / Metatranscriptome117Y
F083206Metagenome / Metatranscriptome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0265344_100472All Organisms → Viruses → Predicted Viral1051Open in IMG/M
Ga0265344_101072Not Available767Open in IMG/M
Ga0265344_101397All Organisms → cellular organisms → Bacteria701Open in IMG/M
Ga0265344_101419Not Available698Open in IMG/M
Ga0265344_101507All Organisms → cellular organisms → Bacteria683Open in IMG/M
Ga0265344_102283Not Available599Open in IMG/M
Ga0265344_102312All Organisms → cellular organisms → Eukaryota597Open in IMG/M
Ga0265344_102525Not Available582Open in IMG/M
Ga0265344_102689Not Available570Open in IMG/M
Ga0265344_102697All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
Ga0265344_102765Not Available566Open in IMG/M
Ga0265344_102896All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium558Open in IMG/M
Ga0265344_103302Not Available536Open in IMG/M
Ga0265344_103434All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium530Open in IMG/M
Ga0265344_103804All Organisms → cellular organisms → Bacteria → Proteobacteria515Open in IMG/M
Ga0265344_103877Not Available512Open in IMG/M
Ga0265344_104021Not Available507Open in IMG/M
Ga0265344_104079All Organisms → cellular organisms → Bacteria → Acidobacteria505Open in IMG/M
Ga0265344_104210All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0265344_100472Ga0265344_1004721F000746GIININYKVIIEVLIEVYFKVITRKSAMFIRSQITS
Ga0265344_100472Ga0265344_1004722F008074VVVIFKGELKSARGLLVYLVVIAVLYKILNCLNLNFIAYLLKNPK
Ga0265344_100883Ga0265344_1008832F060143MRSKSGFISSLLLTAALAAPVAVMATRGPQEASVQVRVYDKNHKDY
Ga0265344_101072Ga0265344_1010721F002220RKAIESLFRERIYLLKSNSIIKLSFSFSFTIRFAFTSSSSLRAKNWLSPKIIILLVYMPTILNRVPIVIIRKYRLNIEVVIKSFSL
Ga0265344_101397Ga0265344_1013972F053416MPTPSYQSRPKASRAGLLLLALLLFRAYIPVGFMPASGVPFALQLCPAGTEMPAHLHHHAGGHGDFESCPFGSAPGAAPISQHIDFQTPGPAPSLRMASPKTPLLVHRSQSTHQPRGPPSLA
Ga0265344_101419Ga0265344_1014191F077550YAAETLCESAATWGKKEGSACVQKAVNDAVARVNAPLLTQYSQLRSKGDKGGLVQLAKTN
Ga0265344_101507Ga0265344_1015072F007705SHVCRGIGIHAIDIVQPPGIGIPRFPDMDPHQAIVIAAHEAKSSAEMQRKVRGEPRSDSLQHIPL
Ga0265344_101738Ga0265344_1017382F018655VVDSIYIVVDYLYRVVDSLCRVMDSLYRVVDSLYRVVDSLYRVVVSLYRVVDSLYRVVDSLCIVVDYLYRVFDSFYRIVDSLHRVVDS
Ga0265344_102283Ga0265344_1022831F061712IYYTRIAALKITGFPIIIIYRVRVVSFKITSLTIAIIKLRSFLKRIISLYIASR
Ga0265344_102312Ga0265344_1023121F017942YRVVDSLYRVVDSLYRVVDSIYIVVDYLYRVVDSLYRVLDFLYRVVDSLYRVIDCLYRVVDSLYRVLDFLYRVVDSLYRVMDSLYRVLDSLYRVLEFLYRVVDSLYRVVDSLYRVVNSLYIVVDYLYRVFDSLYRVVDSFYRVVDSF
Ga0265344_102343Ga0265344_1023431F067942AIGGWAFHKIPDGWKIQEGLGIQQIVTDAFPATIGAMEEPLGPGLTLQHYVDAHTKMFREYLRDPKIDIASPSAIRGSEETVALEIRYSLKDGPPIYYRRVYVRCGSIVGVLTLTTLEKDLPSVRPLYDSVVSAITFTR
Ga0265344_102525Ga0265344_1025251F003931LFADGFTGDRSGFALVELPVGSTKFVTVKTSNAPEFPGSVQWDGTYLTVFDQYTASTYQYAVSGTTATLKNTIQFTGASDCAQTWIVKGLLYCGDAGTNGGEVFKYPDGGSPIATFTGNFDFPLGVTAAKK
Ga0265344_102689Ga0265344_1026891F035852QAMENSILYTFSTIAQALGGAFALLSAFVLFRFQSLDASMLNASLGLRCIWKSKADLESYDTLRGLSIWPSLNKAIEAQIARMIAVHETPSFEVMATKTRLKAGESLHSFLTVVFWVAVSLTFVVMTSSVAIIPYAHDIIETHTAKWIHWLNLGGVVAFGLCMISYMAVIYSALLSRYGKDIIQPRIDA
Ga0265344_102697Ga0265344_1026971F057536VSTEFLDRLASQLKIGKGPASRRAIERILDITKTGYENGEYENPVEAERDFRRLVSLQE
Ga0265344_102765Ga0265344_1027651F004318MVSYVVSYLGLGLVLGTELVLDLGLGSLSILFIVGY
Ga0265344_102896Ga0265344_1028961F083206RQSRLLADIVAKVFSGWRTKILRAAEAFYARRREGPYRFIQNRSRTSVVALKRDTEAEKSEDQLSRDF
Ga0265344_103302Ga0265344_1033021F000247VHTNAINTTLSYKRIPRIEVAYTNYLTSSLNTFIDKTLVPGFSALFAYPSIDRKLYYNGSLSLDESIDLTSTDL
Ga0265344_103434Ga0265344_1034341F041888MRKRSTLFLSLLVPAFLGLGGYAVLKAQQKTSTASATRWSDAATWPD
Ga0265344_103804Ga0265344_1038041F035000RMDELLRKAEEMGLNYDEKTELSLLLKSKGRPQARS
Ga0265344_103877Ga0265344_1038772F004934MPSLTAKDRISLCLFSYEDGRRCRTPRISSHPHFCFYHAQKESQSQTAEKLAKELAYFF
Ga0265344_104021Ga0265344_1040211F030264MSDFQDPINHTTTGTPRWVGLAVAVLGGVSLLGLGVGWSALNHANSIEQSTQASVKQSN
Ga0265344_104079Ga0265344_1040791F009429MMDTEAFREFKTGLTLLRDNYAVKALPHMKKAVDLDRNNPYYMS
Ga0265344_104210Ga0265344_1042101F004883EIEAAGRAARLELKALAAALAVDGAETLLAKQLTPAAQESLVDMFVKSLEGRPN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.