NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028001

3300028001: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-E_N



Overview

Basic Information
IMG/M Taxon OID3300028001 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133410 | Gp0290873 | Ga0247703
Sample NameSoil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-E_N
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19383662
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → unclassified Frankiales → Frankiales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → hill → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)32.5788Long. (o)-110.8509Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013996Metagenome / Metatranscriptome266Y
F048859Metagenome / Metatranscriptome147Y
F067309Metagenome125Y
F076881Metagenome / Metatranscriptome117Y
F104557Metagenome / Metatranscriptome100Y
F104558Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247703_100028All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4251Open in IMG/M
Ga0247703_100573All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1972Open in IMG/M
Ga0247703_101362All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1380Open in IMG/M
Ga0247703_102525All Organisms → cellular organisms → Bacteria982Open in IMG/M
Ga0247703_103129All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → unclassified Frankiales → Frankiales bacterium874Open in IMG/M
Ga0247703_103388All Organisms → cellular organisms → Bacteria → Terrabacteria group839Open in IMG/M
Ga0247703_103670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria802Open in IMG/M
Ga0247703_106389All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium590Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247703_100028Ga0247703_1000284F048859VAEDPIPFSELLAGYGTTTIGDDMAIESVFALLKVRAEDGSAAWSVRSGGAPLSLEELLGVVDGLTTSIRERLTRAWKRTETPAATTGAQSRPVPIPFSELLAGLQTVGVGDGYLIESVSAVIKARRDDGVPVWHVRSSEMKLSSEELLGALEGYAATVRQDLSGSWKW
Ga0247703_100573Ga0247703_1005731F048859MAHASAPWLHIHGTRRVPSSAVAEEPVPFSELLAGYGTTTIGEDMAIESVFALLKVRAEDGSAAWSVRSGGAPLSLEELLGVVDGLTTSIRERLTRAWKRTETPAAATTGAQSRPVPIPFSELLAGLQTVGVGDGYLIESVSAVIKARRDDGVPVWHVRSSEMKLSSEELLGALEGYAATVRQDLSSSWKW
Ga0247703_101362Ga0247703_1013623F076881MASSKAVSRKVYRCPECYARVVGEPDDDAKTTLWLHGLSGRCRAKQTPKTEKPRRKERLEAMLGEEWG
Ga0247703_102525Ga0247703_1025252F104557MVDVAPHLQDHAVGLEMEIVELARQADQAAQEGWPDREAELRRELNALYTELATVAERLTEEVTAAAPAPSVDAPPAGR
Ga0247703_103129Ga0247703_1031292F104558VHALSTWADEHEFAAADARRRTSAEVDFGATWRQAGSNDAWRLSWIRDTAELYVCRADGYDGSCTDVSVLAVIEREADVDRLLEGWRDLRFDPDGLSWLDQRLAPSLAA
Ga0247703_103388Ga0247703_1033882F013996VSTELLIILSIIEPALLVVILTIALTRVRQRLTTISDGLGELGGMLATVEAQHLRPLRKLVDDINGPLNTINATLPGIAKKAALVVRMSRGR
Ga0247703_103670Ga0247703_1036701F104557MVDVAPHLQDHAVGLEMEIVELARQADQAAQEGWPDREAELRRELNALYSELANVAERLTQEVTAAAPAPAVDAPPASAAY
Ga0247703_106389Ga0247703_1063892F067309MSHIIGRPDDDLLDIMLGGQGADPEQAIIADEEQGAGSEDHLPGDEPTVAER
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