Sample 3300027942

3300027942: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_30-Apr-14 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300027942 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114663 \| Gp0115678 \| Ga0209841
Sample Name	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_30-Apr-14 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	149303859
Sequencing Scaffolds	63
Novel Protein Genes	71
Associated Families	67

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	31
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Synechococcus phage SynMITS9220M01	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Groundwater Microbial Communities From The Columbia River, Washington, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → microcosm → sand
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Columbia River, Washington
Coordinates	Lat. (^o)	46.372	Long. (^o)	-119.272	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000331	Metagenome / Metatranscriptome	1285	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000957	Metagenome / Metatranscriptome	821	Y
F001246	Metagenome / Metatranscriptome	737	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F001733	Metagenome / Metatranscriptome	644	Y
F002302	Metagenome	573	Y
F002413	Metagenome / Metatranscriptome	561	Y
F006417	Metagenome / Metatranscriptome	373	Y
F006623	Metagenome / Metatranscriptome	368	Y
F008079	Metagenome / Metatranscriptome	339	Y
F008689	Metagenome	329	Y
F014581	Metagenome / Metatranscriptome	261	Y
F014973	Metagenome / Metatranscriptome	258	N
F015184	Metagenome / Metatranscriptome	256	Y
F020691	Metagenome / Metatranscriptome	222	Y
F024096	Metagenome	207	N
F025680	Metagenome	200	N
F029443	Metagenome / Metatranscriptome	188	Y
F032276	Metagenome / Metatranscriptome	180	N
F034066	Metagenome	175	Y
F036694	Metagenome	169	N
F038918	Metagenome	165	N
F039212	Metagenome	164	Y
F039953	Metagenome / Metatranscriptome	162	Y
F040078	Metagenome	162	Y
F040099	Metagenome / Metatranscriptome	162	Y
F040621	Metagenome	161	N
F042339	Metagenome	158	Y
F048308	Metagenome	148	N
F050378	Metagenome / Metatranscriptome	145	N
F051119	Metagenome / Metatranscriptome	144	N
F052281	Metagenome / Metatranscriptome	143	N
F052587	Metagenome / Metatranscriptome	142	N
F053809	Metagenome / Metatranscriptome	140	N
F054864	Metagenome / Metatranscriptome	139	N
F056606	Metagenome / Metatranscriptome	137	Y
F057367	Metagenome	136	N
F057369	Metagenome	136	N
F057894	Metagenome	135	N
F058132	Metagenome / Metatranscriptome	135	N
F058133	Metagenome / Metatranscriptome	135	Y
F060610	Metagenome	132	Y
F061497	Metagenome	131	Y
F062766	Metagenome	130	Y
F063694	Metagenome	129	N
F065768	Metagenome	127	N
F067432	Metagenome / Metatranscriptome	125	Y
F068579	Metagenome / Metatranscriptome	124	N
F070894	Metagenome / Metatranscriptome	122	Y
F071978	Metagenome	121	Y
F072269	Metagenome / Metatranscriptome	121	N
F073107	Metagenome	120	Y
F075465	Metagenome / Metatranscriptome	119	Y
F076005	Metagenome / Metatranscriptome	118	N
F077283	Metagenome / Metatranscriptome	117	Y
F077290	Metagenome / Metatranscriptome	117	N
F085061	Metagenome	111	Y
F085694	Metagenome	111	N
F088239	Metagenome	109	N
F090397	Metagenome	108	N
F092033	Metagenome / Metatranscriptome	107	N
F092936	Metagenome / Metatranscriptome	107	N
F095480	Metagenome	105	N
F096881	Metagenome	104	N
F098671	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209841_1000310	Not Available	11081	Open in IMG/M
Ga0209841_1000458	Not Available	9024	Open in IMG/M
Ga0209841_1001186	Not Available	4998	Open in IMG/M
Ga0209841_1001261	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4837	Open in IMG/M
Ga0209841_1001352	Not Available	4566	Open in IMG/M
Ga0209841_1001512	Not Available	4194	Open in IMG/M
Ga0209841_1001951	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	3400	Open in IMG/M
Ga0209841_1001979	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3365	Open in IMG/M
Ga0209841_1002192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	3098	Open in IMG/M
Ga0209841_1002208	All Organisms → Viruses → Predicted Viral	3081	Open in IMG/M
Ga0209841_1002575	Not Available	2743	Open in IMG/M
Ga0209841_1002605	Not Available	2717	Open in IMG/M
Ga0209841_1003079	Not Available	2369	Open in IMG/M
Ga0209841_1004049	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1916	Open in IMG/M
Ga0209841_1005295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1592	Open in IMG/M
Ga0209841_1005677	Not Available	1526	Open in IMG/M
Ga0209841_1006310	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1428	Open in IMG/M
Ga0209841_1006763	Not Available	1368	Open in IMG/M
Ga0209841_1006796	Not Available	1364	Open in IMG/M
Ga0209841_1007086	Not Available	1328	Open in IMG/M
Ga0209841_1007848	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1252	Open in IMG/M
Ga0209841_1007976	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1241	Open in IMG/M
Ga0209841_1009158	All Organisms → Viruses → Predicted Viral	1147	Open in IMG/M
Ga0209841_1010838	Not Available	1047	Open in IMG/M
Ga0209841_1011163	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1033	Open in IMG/M
Ga0209841_1011195	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	1031	Open in IMG/M
Ga0209841_1011272	Not Available	1028	Open in IMG/M
Ga0209841_1011746	All Organisms → Viruses → Predicted Viral	1005	Open in IMG/M
Ga0209841_1013084	Not Available	951	Open in IMG/M
Ga0209841_1014081	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	919	Open in IMG/M
Ga0209841_1015070	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	890	Open in IMG/M
Ga0209841_1015690	Not Available	873	Open in IMG/M
Ga0209841_1018256	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	811	Open in IMG/M
Ga0209841_1020208	Not Available	774	Open in IMG/M
Ga0209841_1021018	Not Available	761	Open in IMG/M
Ga0209841_1021121	Not Available	759	Open in IMG/M
Ga0209841_1021942	Not Available	745	Open in IMG/M
Ga0209841_1022250	Not Available	740	Open in IMG/M
Ga0209841_1024034	Not Available	713	Open in IMG/M
Ga0209841_1024664	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	704	Open in IMG/M
Ga0209841_1025761	Not Available	690	Open in IMG/M
Ga0209841_1026042	Not Available	687	Open in IMG/M
Ga0209841_1026844	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	678	Open in IMG/M
Ga0209841_1027324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	672	Open in IMG/M
Ga0209841_1027500	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
Ga0209841_1027534	All Organisms → cellular organisms → Eukaryota	670	Open in IMG/M
Ga0209841_1028267	Not Available	662	Open in IMG/M
Ga0209841_1029217	Not Available	652	Open in IMG/M
Ga0209841_1030979	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	635	Open in IMG/M
Ga0209841_1032705	Not Available	620	Open in IMG/M
Ga0209841_1035007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	601	Open in IMG/M
Ga0209841_1037974	Not Available	579	Open in IMG/M
Ga0209841_1038358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	576	Open in IMG/M
Ga0209841_1039696	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → unclassified Bellamyvirus → Synechococcus phage SynMITS9220M01	567	Open in IMG/M
Ga0209841_1039775	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	567	Open in IMG/M
Ga0209841_1041611	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	555	Open in IMG/M
Ga0209841_1042878	Not Available	547	Open in IMG/M
Ga0209841_1043588	Not Available	544	Open in IMG/M
Ga0209841_1045727	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	531	Open in IMG/M
Ga0209841_1046832	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	525	Open in IMG/M
Ga0209841_1047642	Not Available	521	Open in IMG/M
Ga0209841_1048315	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	517	Open in IMG/M
Ga0209841_1050964	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209841_1000310	Ga0209841_100031021	F048308	MPTNEPFSTKSMMYIELDIDQLNRLQMFNDRLKNIIDELSKKSKNKRARYLEQVKVMDLFIQQNIKKFI
Ga0209841_1000458	Ga0209841_100045813	F051119	MTIKEAFEQLDALRVANALGLDYAVVCKWRDKEQTPASWRTRFVNLMNQHGVKITLHDLAGWIK
Ga0209841_1000458	Ga0209841_10004589	F077283	MTNSEQVAHNSMLRDIECQSYGGDVHDDVQVHHWIDAKRESPIAAQMCWVAVPNVVTCRHQTLLCSMDTDDQWRDASGVLMFRKVSFWQYADVPECDIPC
Ga0209841_1001186	Ga0209841_10011863	F096881	ANFKYTVVVTDMISSNTITESYSADPSGNIQFDASKFSELLMTNYIPINTSDFQLNPSIRLMRVNIGETYGSTPAYYTGTDIDYYVWNGSLELLTFSQYDKDSYVFKLFNSTSPYNYDNPILLSDLANDITYEDRSNYLYWMVQEGNTDLPKITVVAYDASGTQLTSNDITNTYNSSGTYTDNMVCIDVGKKGIDAIDPTWLSGAAYYDILAPVGVELPYNAPTINYSYAAIKRYTIKCSTRFDIYTLHYLSTTGAYETLHCSKVSELNSTKTSTTFKRSPWTNVSNVMTLDYSVAVEQPTIVNVQNGLKLNSDWVTKAELIKYKDLFSSPDVKLDLGSAQGYASVKVTNGTYVSKNNDKLRNLTFDLLFTHNNQRQKG
Ga0209841_1001261	Ga0209841_10012617	F095480	NLLKTAKRIETLQNVKQMVKSKINETIDLISDLDFNIRWVQRKIAQKNYNSFKKSVEHQELIQQMVLKRLKERYNKAVGQLLIY
Ga0209841_1001352	Ga0209841_100135213	F077283	MNAEQVAHNNMLREIEGLSYGGDVQDDESAAPAHTWIDAKRENPIAAQMCWVAVPNVVLCAYQTLLCYMDTDEDWRDAGGVLMFRKVAFWQYADVPVFEGFC
Ga0209841_1001512	Ga0209841_10015127	F052587	MLDNIPDNFIVSNKSIILCLITLCVHLLILKFLYSPYNELGIIKNFRNEVDSLNKVNDSLYSDIKKNKIIINKYTQELNVLENKKQTVIIKYKTKVNEIDTLNNNNLVAEFDSIFSKINY
Ga0209841_1001951	Ga0209841_10019513	F062766	MTANEMADALELKLDRSDSFGSPGYEDFELSSVLSEANSLYVKKYFDELNNRKGKGFQETEIRDQGLGALILDAPSLVSSASQVGVIVNPNVVGKFFDLPLNHMYTIYEECTIDKIECGTAETSIVAYVTPIAHTEMQRFNWSKYKKPFYNISGDSRVWRSEFSRQVTGINPASPATAKRHEMFTDGTFNITAYHMRYVKNPENIVVDRNTPANQRNCELDTSTHIVIVDIAMSLMSDRIREQRVQNIEQFKELE
Ga0209841_1001979	Ga0209841_10019796	F040621	VPLHIQRERLATCKKCKFFKPLTQSCGTLIVGNTVELEENSVTHYKEKIKLCGCIMPIKTKFVFASCPAHKWFALDWKEDEIAALDAFINRIHKANKIEPHDLQQLYAWATKVIGRKQDVSGCASCIRDLITEFRRQLNKVDSK
Ga0209841_1002192	Ga0209841_10021923	F077283	MSNSEQVAFQKMPRESEVRMFGDDVQDIEETTHTWIDAKRESPIAAQMCWVAVPNAITCRYQTLLCYMDSDDQWRDASGVLMFRKVSFWQYADVPECDIPC
Ga0209841_1002192	Ga0209841_10021926	F051119	MKIKEAFEKFDALRVANALGLEYGVVCKWRDKEQIPAFWRTRFVNLMNNHNVAITLHDIAGWIK
Ga0209841_1002208	Ga0209841_10022082	F032276	MIPTNVNNLTIKEFIEYENIRTSSLENIDKIIQIASSFTDISVSEYENMSFNELEKVKSKVLLLINSKPNTRLKNTFWHDGVRYKACKDEKDFKTNQYTALKQYETDVINNLHKILALIYVKCPIFSKYKFNSDNVDIIADVIYNYGKVGDVYGTLFFYSSRSEKLKADLLNSLEEVQKEIAIHMEEVNRELNLSEENMVGTL
Ga0209841_1002575	Ga0209841_10025755	F076005	MKHFKVRVQYANGVEFIYECKTLTNWQAGAIARVEGRRLGLGGAMDVKETIVVEVE
Ga0209841_1002605	Ga0209841_10026056	F077290	MQCPKCSHSRHGVKSSNSQLPDQVVRQRVCQACGWMWFTVEAEVNRFAIGWSTASSKPVLREAVTLELGFVPELPRGRPPRGHITNCDSPGDVPPVGGIIRRRPKGLPPTSQK
Ga0209841_1003079	Ga0209841_10030792	F054864	METNVISKIKDFIITKLSVDERVALEGLNPVAEKPTMPTDEKKPSTEQTPEVKMKEAKTVDGLVFAYDGELVIGTAIMDITSGTATPVMDGEYTMEDGNIVTIASGVVAEIASKEAEVETAKTPEEKEKALVPEEMKKDMYQMSAVQVSLQSELVTLKKQVVLLNKVVNEILNTPIQNETKVSKNWEELSPLEKFRLSK
Ga0209841_1004049	Ga0209841_10040496	F036694	LSIKTTIDKHFADYYSYYKRICKKYYNGRYLAEDMLHELYFKLLAEKPESIDKYNKDGKLYILGLYRLRDLFRNRTRTLQHIDGNTSSLHEMSNYEIRDFAEEPMELLPIDEINIERIKNCIFDGLLNQDHDIEVFVMAQIEPL
Ga0209841_1005295	Ga0209841_10052952	F001725	MAAISNGTTCLYGVAGSVTNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSEITIEGICKTSTMPVLGVALSFTLNASTAYPAGSASVSFVGTVTKIDEKGSNKGFTAVTVTAIDYEGITPA
Ga0209841_1005677	Ga0209841_10056771	F053809	MLRQEIYTHYLFHKSNQYNSIMRPYTYTPKSHIRPYIRNTLLLINDQLPLLHLHVNYLSQLQLINRRRLHDFYVLSGKRHTREAGAIRVAEIGAAYAEDRIRAHLGALIVDNNDLLAEWFRLKTYTDGHTPLICSNRPALQMNTMPFDTDGVCTIQGNGIPHPADMRSTIQIIERILLPHAQSAARCCTITDYRNHNAAYMCVREFVRETKRSLDDVRQRLYFLQYDEIDLWRSVQNFEYNIEDGSTVIRELFANTQPTQPFPQVVTPTTNGVAHNARKSPNYLTR
Ga0209841_1006310	Ga0209841_10063101	F073107	IQRNREFMLKTNSMRPVISFTDLLPYMRFGLMKQDAAKETRIVSISAVNPRI
Ga0209841_1006763	Ga0209841_10067631	F092936	LVIIAAIKIQSHIPLAPGALFTVENPAIVQKWMANGTLPLIFTAQSIKSVLHESELYEIPPVPQSKSQHGFILSGVDITLLNMQVTTINCGGSMCDGLNMYQNSVTADRCPCYNVLDREGKVCLVLSLKVSDPKNNLQFCVHNHTSKSLTQLFMKRIPKGAVAATITGNQKHMGNLSTKVMEMLTLGNDYDGFNISGWIKRGTIADSGVVQPPTGSKWDKPQQVDSGGLTYHLTKIAYASLPSDRLLGEYQFNAGSLV
Ga0209841_1006796	Ga0209841_10067961	F052281	MMNTEVVDYTHFDGHTYRFSSTSKKENESKYLCNKYKLAGETALWGTRRQSMSTGGTTPGEKCPGSLIVKHEFGMSGGDHPYIKVEHKCVDNREVTSAVARGVKDYRPQLERISPNIEHGNFLSRKVIEEVLRELKNAEKNDKNLWQNITGGNTVRKWIPDMYDNNVKRVALKVIVETALKGYITIVQGRYPTLKYFKVGALKNLPGAKSQYVGHGGRLHSDYPQSVEELEPRFRPVSIIVGLNSFNFMWLNDRTSRESEIRQMTVYPGEMIMFTNHCLHAGGENSTNEEQTRLFAYLASDESHFPSGEVTTWDWQRGDNNPLISKPSRNANTAIVRRPGTNQIRLISGRVASVGGVPDR
Ga0209841_1007086	Ga0209841_10070864	F060610	MDDGIDSVQVITTLDEGCVVGIGCKVHTHHHLIEVKPQVIYQSMTKITIFGKQYCTNQWGQTFEIAADDPLPIPQPMQKIYASDTITPTTSAFLVAPKPEQKIIIKPRTEFAEYQPTMDAPIMGMLLTFTIYLTAQWAWSSMS
Ga0209841_1007848	Ga0209841_10078482	F020691	VTPRANPGVSNPNSFFDAKTVREIRLLHLCDGIAASQIARDLGVNVSCISRIVNWKSWAHQDEDLRAIPKPGHKGGGDYHQLKPDGYVKPAPPSRLTCRSCLHLNSNTGVCDFGFPESLTSAYTFAAKCNVYQALG
Ga0209841_1007976	Ga0209841_10079762	F058133	MANSISAAPSVLSAGVLSALQNKLPVLSGISSVFSARPGSTGMAIQVPLIGTSSATAFGSGGYLTQDDATITAATVSLTQYKISSRFTPSNLKDYGADFFVNNFVATASIGLAQKVMDVINAQVTAANYSVSSTSGVDLAYSELVGVQKTLDDAKAPSPRFAVLNSSLIAGLRADTTIVGNNVLGADIIRSGDLA
Ga0209841_1009158	Ga0209841_10091581	F057367	MQEDLPTSSGIDLMTWLNFEAAITRNPRVAQSLRDSAAEIGHLRTQLKAAGVHNYNELTSALRDMTRTAEVVLTTPHLQIEQRENARADMAESVRYCKKLMQSA
Ga0209841_1009158	Ga0209841_10091584	F063694	ITVGSILAADQLRELHGAAKAAQARLRELIQLIELSCIEHIETTGHDIELVDGKRWYVGSEKKIKAIDDTMILQAVLESSGGDVMKLTTGEFGVLCSSPWKNGAVKQLIGESKFNELFLTTTVQSLETGKAAKVLKVVDPAFLKGGTQ
Ga0209841_1010838	Ga0209841_10108383	F072269	VSRFALILDLRAQLYFWIATLSAFLVQTEALSDWNQWSSLEWSRTAMGALISGATALRAYVDQSISVKAKG
Ga0209841_1011163	Ga0209841_10111632	F001298	MSLYADFLADAKEMIADFGVAGTANSGAITFQCLISDPAVMTVLEAGGYMERTQYSVRMPAVTASWTLPDGSTGSSAALLSAGVPIASLGQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ
Ga0209841_1011195	Ga0209841_10111952	F065768	MSVCLPCYDAGSYVDACLTEFTFGEVEAETEFTVWLQYNATQNIMQFTATSDVDGNITIEGMQLDPLQGYTLWITIDGVRQDITVDGDIYTCLSFSAVSIGQSPVVIP
Ga0209841_1011272	Ga0209841_10112721	F098671	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITNQYNTGVELFEAKRAFAWRKMSTDILSRLNPMMKADTVVEGKRIGQVVTNAANIDTLVGAGKYTGIRVTIDPNTESFLNFYLSNFKIDIYTMAVPVEIFVYDMTTLKLIDSFFYQSEAVEQFIGRTFKANRRKMDLAFVYESLYDTTKMVAKKGHCFNCSGQV
Ga0209841_1011746	Ga0209841_10117461	F034066	MSFTSIPNQPIIFTSNTVVDCPDCGGDYKQLLDFNDQVFFQVESTPCPLSVLFKYDTIESAWGVPVDNQVCSTALDVSGLYCQLLRTNYIYQLYQVEFTVLTLDQGSLTVGMNGSSSYVLTLPGTYTLYFANPTMTNDSVTLCFGSDSWIGCLSTSGIRVYGLASENQMKVGVVDAVTLETVDIIAPTYTVKDNKITTAFALTDVALGEGCYRLAITDFCTNTCGQMYLYNGIFRDA
Ga0209841_1013084	Ga0209841_10130842	F015184	LQEQHSLLFSASLKNGKGWATLGAPIAQGQHSTLGTQFGFSHTSSHFGFGQLGLWHFQSHLGSSQTASHSGLGA
Ga0209841_1013212	Ga0209841_10132121	F067432	MFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPKCDWKCHKPNCPKPKCELVCENPNCTPKVECCPCATTGAGATPAFPFFKETETNNRCCGCGKTGSGAPTEQGR
Ga0209841_1014081	Ga0209841_10140814	F056606	MTIRAEQIVNATLELTLRPQSEDRKKVVAAVIREVADRLCTDLGERECPIDKLREIADEVEAL
Ga0209841_1015070	Ga0209841_10150702	F050378	MTAEAWVQIGIQAFITTVSIGAAWVALQVRLTRLETQVAHIINTLDGQQQEVRRIEQRLGKLENKVSALEAIINR
Ga0209841_1015070	Ga0209841_10150703	F001733	MNSISIKRLVVVVIVAFVAAFTSVFGDGVRTSEAHDLSELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFSGTQANALKVGK
Ga0209841_1015690	Ga0209841_10156902	F002413	MTEPPQPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMNEEFKCENRDTLVNMGKFARRLDKDVFARHFANWCPVMKHHDQVAPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGIGPANDEELDSIAEIRASHSFDQEYIFKPNGRQQIMSEGRILAKSWRL
Ga0209841_1018256	Ga0209841_10182561	F071978	VYNRDKIITTMQEIYDESKTIAPYVLIAQPRRNLEETAAQNFDGYDGLHIDLMGFSHGFVHIGGEKVDVARNYLIEQALSSGAKYMLFIGEDTVLPYDGFKVLHETAEKNP
Ga0209841_1020208	Ga0209841_10202081	F025680	GRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLTNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWMIRDDENPDIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLRDSLFRLSSHRDNGRKRQATT
Ga0209841_1021018	Ga0209841_10210182	F008079	MKIKDEYIGAKISHKGNRITLDVNRYDYFVSIGLGYMFEEPTVSEPKVVKYKAVKGPIPEPEPVVEDTEDGTEAE
Ga0209841_1021121	Ga0209841_10211211	F014581	SYAISKDEASIKASCETIKMKTPEGEVKVAVLGNSPGPEEYLQHISSFVRMLERKKISEDMLKLAKAVASLKVPVRRLTTAPTGEKPADKTVRLGLLKSAADKLVEANVHEDAKLETVYELFRKTLKEDPELQWDRIVSDMHTKDPWEDLKGAKHDGIRGKSSKSLWECIDFHKRTIYSIDAAEQQRLYILCHLKKPAKSSIRAHVTRMETLNKHLGLLPTIKNSPQAVASTELGNVPFNETTLASIILSHL
Ga0209841_1021942	Ga0209841_10219422	F061497	MIDITLKGGYVTFYSSAIGVIASNVESCEVVDEYSYHLATSFGVYLININDSTINGITFSTSDEAVTFILKN
Ga0209841_1022250	Ga0209841_10222501	F090397	MIINELAKKDAQWRKMALQICKCKDLADELTQNMYIKLSDRTIPVSDGYIFVTLRSLFYDSLKNNDILIDDFSKFEIEEEEYNDGIDYSELSKGLTWYERTLFELSTLHGQRELSRQT
Ga0209841_1024034	Ga0209841_10240342	F058132	IVDLSSMAGEGATLKFREPKAADLFPDAKELQNLRIAFAEFPEAMLYQVYLLGRCYVSDPSDMGEDSPVRAFGKLARTSKLTFFHIVGRFVDWYPTGDISERVTESKNDCAE
Ga0209841_1024664	Ga0209841_10246641	F075465	EWKSYRESLKEITKHRGKVYSLVTGQCTQLLQDKMKQDADWETVSKSSDPLSLYRLIEKTILAQTEDQYPFATVYEQEFSFYSFRQESLTNPQWYERFNTKVDVGTSIGVTRQHKALLDHVAAELHQQAFATLGTAEQQAVREDAEERYLSYVLLRQSGSQHASLKKDLQNDFTTGDNRYPKTRQQTLHLLDKYCTTPAPKPTPSEGTSFAQKERDKDKKNGGGDRIPRRKPFN
Ga0209841_1025761	Ga0209841_10257611	F070894	MNILVTRINFILTKTWSLTYGCGQQRNRRDKKCRQIDDDFGGHGDAAVRCGAHRPMEHIQGFTRSHWMPPSGECLRRIAPAAAMVKKFK
Ga0209841_1026042	Ga0209841_10260421	F085694	MTNTNYIYTLQDLYKIFQQAEDKVAQLKEFQSLNLEYKINWDNLIS
Ga0209841_1026844	Ga0209841_10268442	F057894	YTHTWSNTNQNEQMTMAANRWRSGYMRQQDDIFIGHLTPIGSVQDVEVTFKLKAMQKIMEASEDLQVDAPNEYLIGALRDSDAGYKTADVIIYNKVVRLKLTEEDIKRSKTLSL
Ga0209841_1027324	Ga0209841_10273241	F088239	MASFDELVKRKIKLLETVPETIVTAAEKAQRDAWRKLGPLLAEMDVDATGNIRQTEDNIRRIGLITDELNKVLAGGEYKDAVQSFLGSIDEGVQLTDDIAKKIDASFKPDNVQRQLLAISKQNAINAFFGSGLKENVTQPFLEQLTANVAARAPLR
Ga0209841_1027500	Ga0209841_10275001	F006623	PDVPGDYFVFGDIYDNDNNLIGTFGPNGTSVFGWWVTQDAQFQQSYCQQFAVIMGQEIVNGTAE
Ga0209841_1027534	Ga0209841_10275341	F039212	MVVIETKLDGFDGKLKYDKLNYPNCICGKCFKMYFNSLHIGARQSGKTYSVVKIIKHYETNKIIKDGVEYKLRTHLISPTIQANEIYHSLNSLDMKKDAHENYTDKLITDIIDDIKAKKVKCDEYLLYKKYYDKFNKTPENKLDKLYDEEPEIFYMLEEYDYQNPKDIKHEPAKVNIIILDDLLGSDA
Ga0209841_1028267	Ga0209841_10282671	F038918	MDEMDDYYRNKISLSPKYIEWTKLPDESEMFYSKKYYRKPVDEIKLLAQIKRTIVSNDRATQKRKKPKSESLLTDDELFEKVRNNDVYKEFMKLEHGKTKFYDCKNYVSGNAGDLKKLMNRISNRMNCNKRRTSGVDVEIGKRGTVVADSVGVDVEIQTKDAAVAL
Ga0209841_1029217	Ga0209841_10292172	F085061	MNPLDNIGAEFAQFNRYMDAIIDPREADDDTPQAKVKEAIIQAYSNGFHDGQQSMYKRLPKPKDLGGDEGGREYYEAL
Ga0209841_1030784	Ga0209841_10307841	F092033	VFKENEHPLEGFQPEYVIVDFPQYCGPSWMESQKTWVPIPAVEMNCDKRCCQLQYIPLSLAYAKTCHTFQGQTVGKNHPISCIIVQPGTRDFEGKCPGLFYVFLSRATDIGSSDDRRSSAIFFDGPDMTNDRITDLTRSLTTGREYVKVTKRNQWVKYLRKHLIKQHISNQQKSSLIRWCERTKVSEEEVKRVIQDPRWRKSSMLNY
Ga0209841_1030979	Ga0209841_10309791	F042339	MIYWYGTAMEIDSLYQMEQLKVNYYAKITGIQANSYETLAEIYANKQAIDKAIATEKDAEIKQLRKRNTRLIITNTALTLGITAVALSTIYFAIL
Ga0209841_1032705	Ga0209841_10327052	F039953	EKLNRGSHRVNNMIPEADLKVDGWGNSIIEAYTGNHAGHRAFRKRLKVITAP
Ga0209841_1035007	Ga0209841_10350072	F000957	EGMRNLILEIYEVNERIMTGDICSAKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYAAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0209841_1037974	Ga0209841_10379741	F040078	QWQDAENSGLGEIDTPGDYELHSETGLNDTVYNLASRYATSGLGYLYEDAQGRIGYADSTHRSQYLATNGYVDLDGNHAIGPALSIVKRAGDVRNAITVGYGIGSASVDDEDAASISLYGQLATTISTTLRHKADAEAQAAFYLLIRAYPQFALRQITFTTANPEIDNADRDSLLNVFMGMPLNITNLPTNM
Ga0209841_1038358	Ga0209841_10383581	F014973	ELTTNMFVICEWEKTEGRKISDGKGIGYTDLVCWAYNLLKLSGQKMPATYRDWVKENPNMTIEAIDETDPNLTA
Ga0209841_1039696	Ga0209841_10396961	F001246	ANQALIATVLFAVSEALGANPKVKANGLLSLILLQVQGQLKAKGAKDITP
Ga0209841_1039775	Ga0209841_10397751	F068579	MLSCLSANDYIEIGERRWHALHNRAQEMLEDSRADSTQRVECLKAIYDLRDRTTQLAIQHGATLEGALEVIEHACKKAKVDGSEAVALMQPEAVVSTALALFGIDLDAESSNPK
Ga0209841_1040896	Ga0209841_10408961	F075465	KTQYSNEWRSYRERNSNLTKHRGQAFSLILGQCTQLLQDKMKQDTDWTLVSTSYDPLILYRLIEKTILAQTEDQYPFATVYDQELAFYAFRQDSLSNPQWYERFNTKVDVGAAIGVTRQHKVLLDYVAMELHTQTFATLGAAEQQTVREDAEERYISYAFLRQSGLQHGNLKVDLQNDFTTGDNR
Ga0209841_1041611	Ga0209841_10416112	F000447	MGYIEIFRIDEQGAGWVDLAEATPDELFNIEIGLLNEGAFEXT
Ga0209841_1042878	Ga0209841_10428781	F006417	GKLDCLRKSVSPNEADESEEQRKRRIQANWDGDCSFEAEGKGNSDWFVKLMNNYELKKGLVDVNGEPVEKDFDDQADMCEIVRALIANGKVPAVGEDVKSIPLDVLDYIDCPGSESQTQVCAATGGSFAEKSKWYVLLDGKSITLNKEPKYIIAKNPKS
Ga0209841_1043588	Ga0209841_10435881	F040099	MNYEVQTYDTTDNTVYYETVEDAIDYEDARDVIAEKYP
Ga0209841_1045727	Ga0209841_10457271	F000331	SYGIKRKPTTVRNPQANAILERVHQVIGQMLRTAEIDMAKSVVPDDVDVFIDNAAWAIRSTYHTVLKASPGAAIFGRDMLFDIPFLADWNKIGDYRQSQTDRSAERENSKRIDYDYKVGDKVLIVKDGILRKAESRYGKEPWTITTVHTNGTIRVQCGSKSERINIRRVTPFSEDNI
Ga0209841_1046035	Ga0209841_10460351	F029443	MTLANLVAKLKAIQEAHPMIRTFGEGDIYDYTDNGGEIVYPVFWTVVRPSQYSNTTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNTYSFNTPPQASVEFFQERFD
Ga0209841_1046832	Ga0209841_10468321	F057369	SADSTPAHADNPYRHNPTVVTEVLKMMIEDPVAEFIEAAADGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLVSATSAEQYRIAKSLTEGT
Ga0209841_1047642	Ga0209841_10476422	F008689	MRFGEVIQALMAGGGNAVWRGEWGGAVFLRYSELWNIFELHGPKGRVTQLEELSLSPGDLFATDWAIVVLDPRTGEVAR
Ga0209841_1048315	Ga0209841_10483151	F002302	MPVAYTDLFNEALDDLSATLTAVTGLRVVNDPTKLVPNCVFITAPSFTTIAGNGNIVRMDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA
Ga0209841_1050964	Ga0209841_10509641	F024096	MTATTLVTGGTYLLELSSGYDGEAFYLDDSTLNGPDVLDGNGIDFVDITPVVQNMRISRGRHKPLDVFGPGTMSVSISVPKTNRDYDPLNTASPYYNTLTEQPGLAPLRPIRLSRNGEYLFTGVVTTYNQTYTLDGLTSYNIFAADN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027942: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_30-Apr-14 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences