NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027939

3300027939: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_1-July-14 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027939 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114663 | Gp0115669 | Ga0209865
Sample NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_1-July-14 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size55960900
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Nitrospirae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameGroundwater Microbial Communities From The Columbia River, Washington, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomemicrocosmsand
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008161Metagenome / Metatranscriptome338Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209865_1014553All Organisms → cellular organisms → Bacteria → Nitrospirae526Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209865_1014553Ga0209865_10145531F008161YSMESSQKDALIGTITWWGFHALLMWMGAWHFLSRETADGSILASDLFAGGLIGATVLSLLRLSVGCHLLRFIALIGILLVVFHVWQGKAAWGSLTDVAIWAYTFYSFGPSSWRYSLYSPLGIFGKVKA

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