NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027474

3300027474: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A5-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027474 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0091569 | Ga0207457
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A5-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19899945
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
Not Available7

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017759Metagenome239N
F025530Metagenome201Y
F028161Metagenome / Metatranscriptome192N
F029054Metagenome / Metatranscriptome189Y
F051177Metagenome / Metatranscriptome144N
F054151Metagenome / Metatranscriptome140N
F060880Metagenome / Metatranscriptome132N
F064778Metagenome / Metatranscriptome128Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207457_100115All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1033Open in IMG/M
Ga0207457_100269Not Available860Open in IMG/M
Ga0207457_100326Not Available826Open in IMG/M
Ga0207457_101419Not Available584Open in IMG/M
Ga0207457_101795Not Available552Open in IMG/M
Ga0207457_101881Not Available546Open in IMG/M
Ga0207457_102422Not Available513Open in IMG/M
Ga0207457_102578Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207457_100115Ga0207457_1001153F054151MRLAECKFPSVNSPDMRKVDQYTLADHFRALAEGLSLRAVSERAPAQRAELQRLAECYAELAKQQSPADHFARGVGPR
Ga0207457_100269Ga0207457_1002693F017759TFFKNKHRRAMLSGAVIVHGCNPLLLFGVVVGLLNSECPQQYGAYESKYGAHGQHIELQGKVHGSASLVDALRLARNDPAPKAPVTRPAFPAGGIAYRTCAIDNRLIERLKKSEGPKILIVQNSCDTEFFMANLRQIPSILRGNDSAPSPRKKSTRQSNA
Ga0207457_100326Ga0207457_1003262F025530MSDMRISTSTTMQIGEAARDNIAAGIWFAVLAGSLFLYAQSILMTTGLMLELTAAYSTFVLCGKSARSPFVHAIPYAFALAGAVFLCLAPDFHNAIEASLVFLGVTALMHGSVVYSALKNSPESEDPAYASA
Ga0207457_101419Ga0207457_1014191F029054REVVSESGLRFGHVHDLRGELEDGRLRVTGLVVGGLGFLERFGVGTGGSGGANKAKVHGHAATPWERVVRVGSEIVVRD
Ga0207457_101795Ga0207457_1017951F060880MHTSADFRKTQRRRAELRSQSEAAVATIWLVFYVLGLVVAVSSPIVS
Ga0207457_101881Ga0207457_1018812F064778SKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0207457_102422Ga0207457_1024221F051177TTAELIALERALRGLDTDDARAAVTKAHRSPAVLTANEREAVLSALRALLGDPGAADNKWEGLARLAAKLEHEQETAVAEPPPARRTRSTKS
Ga0207457_102578Ga0207457_1025781F028161HLHVRRKHPVLDFSAVGSKPAYGRRRMKASHVVTLSLAAVLAALAIQAVQAQDNKNIREDDYVRKVPLEDFKVPIVPIIPPGSSLDLRPGRTPDSADRVYNSTPFARDPTTPSIGLSIKSPFDDRK
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