| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027399 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0055664 | Ga0207608 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-11 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 22638766 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 13 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1 |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.2958 | Long. (o) | -89.3799 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000569 | Metagenome / Metatranscriptome | 1018 | Y |
| F003059 | Metagenome / Metatranscriptome | 510 | Y |
| F003218 | Metagenome / Metatranscriptome | 500 | Y |
| F014858 | Metagenome | 259 | Y |
| F017538 | Metagenome / Metatranscriptome | 240 | Y |
| F024545 | Metagenome / Metatranscriptome | 205 | Y |
| F024822 | Metagenome / Metatranscriptome | 204 | N |
| F037212 | Metagenome / Metatranscriptome | 168 | Y |
| F049092 | Metagenome | 147 | N |
| F049708 | Metagenome / Metatranscriptome | 146 | Y |
| F079360 | Metagenome / Metatranscriptome | 116 | N |
| F082749 | Metagenome / Metatranscriptome | 113 | Y |
| F097649 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207608_100011 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1975 | Open in IMG/M |
| Ga0207608_100041 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1636 | Open in IMG/M |
| Ga0207608_100051 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1562 | Open in IMG/M |
| Ga0207608_100180 | Not Available | 1155 | Open in IMG/M |
| Ga0207608_100248 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1082 | Open in IMG/M |
| Ga0207608_100975 | Not Available | 741 | Open in IMG/M |
| Ga0207608_101130 | Not Available | 705 | Open in IMG/M |
| Ga0207608_101538 | Not Available | 641 | Open in IMG/M |
| Ga0207608_101960 | Not Available | 599 | Open in IMG/M |
| Ga0207608_102832 | Not Available | 534 | Open in IMG/M |
| Ga0207608_103360 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207608_100011 | Ga0207608_1000112 | F024822 | VREPFIRIAGAILCALALSGCVDSSGPLLSDAQPVLGEQLRLQFYSLRKGTADEPEQATYKWDRGTYQRTGGGMTDIGSFSVHPLARDIFVVQSASAKRPGMFEYAIARRLVDGVYQVIAIDEADAGRVTRARFCKRASDSSCRIQTRNQLYAFARATAERRKGQGGLVLRLADGVAESS |
| Ga0207608_100041 | Ga0207608_1000411 | F097649 | MINAEAVNSVTERKPGGRPSILTKDVMAGIPVLVQQGLNAEAIAARLGCTVGTLKVRCSQAQISLRVPKEKVVPLVPSFKPPKQKRSYPSSFALPTTLRLSQVALSR |
| Ga0207608_100051 | Ga0207608_1000511 | F003059 | GAAIVTAAMPAAAQVRDAVYRGTLVCDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK |
| Ga0207608_100051 | Ga0207608_1000513 | F079360 | MRRTLTVAAIAVLVFAGIAKLVAAPSRHAAGRDTSVQPTISTYDLHTGYPGMNTLPVAEIPQP |
| Ga0207608_100180 | Ga0207608_1001801 | F049708 | IPTDKILPRPIEESWELVRDILWAGMTIISIGLLEVMSPLATPFASASGLRRGDVAEILLAVILVAAAVYSALRLRRKDLTPRWRGTHTFFLLLALTLVAIVRFTLYSWSHFA |
| Ga0207608_100248 | Ga0207608_1002483 | F037212 | ELIAAAKIGFADWRRAMTNNEIGAADISEPADAIAWRHFWLANVVVESDGRPLVRATRPALQPRKDSLSRRLQRLRHMRAILDAPRH |
| Ga0207608_100334 | Ga0207608_1003342 | F082749 | MDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGYKQVLKASPVK |
| Ga0207608_100975 | Ga0207608_1009751 | F049092 | MKFIEPVFETGGDLWRTLSNVPDADARALNEKLARQSAELNRRLTEILELHNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQQ |
| Ga0207608_101130 | Ga0207608_1011301 | F017538 | MKDSLTLVRASRNRDGEWSSDDYDVFEGKQLVGRVTLTPQAPEGRPWFWTITARPESSQNQGYAVSREQAMLEFNARWRNPARV |
| Ga0207608_101538 | Ga0207608_1015381 | F000569 | MDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERILSALFPVFAFVALFAVRIVYGLFFEGKPYTLPHFLAAFSVTLVFVVVGGLLLVLGAWPFCRPHRREQLP |
| Ga0207608_101960 | Ga0207608_1019601 | F014858 | MSTSEKRDPRPVSRPQTGQSRLSLIGRHTGLLAVAIFGTLLSAKIWVPVAFFIVDTFPVNPALAGAALFIACVVFFLCIFGVGKRSRVIGLVSRVILLFLSVVAAIASMETISFGLISVTVTASREGFVWVSIAIVLVACAALGLKTALDWRLSYWIVFPAVFATLIFATFGLGIFSLI |
| Ga0207608_102832 | Ga0207608_1028321 | F024545 | QRTKKPKVQIKRQKGVARLGYRIYIDGTYMGTGSTRASARDGAQRMLVIYAT |
| Ga0207608_103360 | Ga0207608_1033601 | F003218 | SLAAGLLLVPVALAGPSKLYFEDTIPSGKSTAVSVTTQKSAAFRVLLRVPTAGRAKLFLLGRHAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |