NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027269

3300027269: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0745-MT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300027269 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114432 | Gp0296283 | Ga0256907
Sample NameMetatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0745-MT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size246734235
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → research facility → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Iowa
CoordinatesLat. (o)42.0Long. (o)-93.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005470Metagenome / Metatranscriptome399Y
F028371Metagenome / Metatranscriptome191Y
F028375Metagenome / Metatranscriptome191Y
F034478Metagenome / Metatranscriptome174Y
F104141Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256907_1003535Not Available4409Open in IMG/M
Ga0256907_1059771Not Available1023Open in IMG/M
Ga0256907_1070849Not Available913Open in IMG/M
Ga0256907_1081051All Organisms → cellular organisms → Eukaryota831Open in IMG/M
Ga0256907_1120458All Organisms → cellular organisms → Eukaryota620Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256907_1003535Ga0256907_10035359F028371VVVDESFLVSASEDGLDVSGLLDFSSTFNDLLLGEFNTVVLEVPLSERSSIDLDDTALDQSVGSDEFVVGGVVDDTDDLGLSGDLFRSPGEVSGVESEGLEFVVSSSNSVSSDGLFTDLGESGRTTRFVLLLLLVDGH
Ga0256907_1059771Ga0256907_10597711F028375EIKSWLETYPRLNWRLTFDFLLAPENAKAVEFSDYGVACFVKGFQKEFIDRDYNEALNWYETGAMQYDSLCLFRLHEVYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPDILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVETILDMLTNDILFDNFFQNYITHIKLLRAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLGILQSYDETFCDGSLVLKWKNTASWVNNFVGFCCEKGIGTSKDNNKALEAYDRDMREMPRVLFSR
Ga0256907_1070849Ga0256907_10708491F034478HREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL
Ga0256907_1081051Ga0256907_10810511F005470MSAINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE
Ga0256907_1120458Ga0256907_11204581F104141LQQGDQEVDRHVDVLSEFFFGHGSNTDSSTHTEDLLQLESDGRLDFLKLFFNLFVFTDSDGELADLVEGVTHKLGDLLHQGFGGQKDIERLSPLLDQLLILVELLGTIDIDATNIDLLGLVTVDGSTDKTDLSVGGGDIGESDGSVESLILFGVVVSQTDLEFNSFGELSGLSTGKHISNCLLKSFGTDLTMEGVR
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