NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027265

3300027265: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanotroph_Enrichment_5 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027265 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114675 | Gp0119871 | Ga0208789
Sample NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanotroph_Enrichment_5 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size252479944
Sequencing Scaffolds26
Novel Protein Genes27
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes8
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Salinispira → Salinispira pacifica1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_311
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → wetland ecosystem → enriched soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Ohio
CoordinatesLat. (o)41.3769Long. (o)-82.5172Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010231Metagenome306Y
F017253Metagenome242Y
F025315Metagenome202Y
F027599Metagenome / Metatranscriptome194Y
F064436Metagenome / Metatranscriptome128Y
F069690Metagenome123Y
F074396Metagenome / Metatranscriptome119Y
F074797Metagenome / Metatranscriptome119Y
F075038Metagenome / Metatranscriptome119Y
F079372Metagenome116Y
F081459Metagenome / Metatranscriptome114Y
F085790Metagenome / Metatranscriptome111Y
F087946Metagenome110Y
F102533Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208789_1000023All Organisms → cellular organisms → Bacteria338269Open in IMG/M
Ga0208789_1000058All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes179730Open in IMG/M
Ga0208789_1000338All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes50149Open in IMG/M
Ga0208789_1000531All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes34288Open in IMG/M
Ga0208789_1001267All Organisms → cellular organisms → Bacteria → Proteobacteria15132Open in IMG/M
Ga0208789_1001413All Organisms → cellular organisms → Bacteria13535Open in IMG/M
Ga0208789_1003032All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes6535Open in IMG/M
Ga0208789_1004217All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales4994Open in IMG/M
Ga0208789_1004303All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Salinispira → Salinispira pacifica4926Open in IMG/M
Ga0208789_1007737All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3189Open in IMG/M
Ga0208789_1016143All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1904Open in IMG/M
Ga0208789_1018023All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1756Open in IMG/M
Ga0208789_1018385Not Available1732Open in IMG/M
Ga0208789_1028178All Organisms → cellular organisms → Bacteria → Terrabacteria group1276Open in IMG/M
Ga0208789_1029455All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_311236Open in IMG/M
Ga0208789_1029925Not Available1221Open in IMG/M
Ga0208789_1030679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1200Open in IMG/M
Ga0208789_1045897All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.899Open in IMG/M
Ga0208789_1048985All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes858Open in IMG/M
Ga0208789_1064225Not Available702Open in IMG/M
Ga0208789_1068633All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium668Open in IMG/M
Ga0208789_1083793All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes578Open in IMG/M
Ga0208789_1086307All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium565Open in IMG/M
Ga0208789_1087784All Organisms → cellular organisms → Bacteria → Terrabacteria group558Open in IMG/M
Ga0208789_1088352All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes556Open in IMG/M
Ga0208789_1090380All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium546Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208789_1000023Ga0208789_1000023202F075038MSSTWDLRKGKVKVVEDASTASLVVIARDLKDRDEKIAVLEEVVRRLKA
Ga0208789_1000052Ga0208789_1000052152F017253MVNFQNLSKPILFQVATNIGGNVGSYTQGRTAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1000058Ga0208789_100005865F102533MKSLVKKKMEVQKVNTKKTAQCCAKTSKTVVGCHD
Ga0208789_1000338Ga0208789_100033812F087946MLSKQRIPDLIVIAVLGLLLILLNYIGKIGIISDYPFIFLLAMYFIGRAMTWYIINKHMDNESEEE
Ga0208789_1000531Ga0208789_100053133F010231THAYVHWLADVHSGGFAPAFTLSFHDSECSRKPPNAHSLGRYAQV
Ga0208789_1001267Ga0208789_10012674F085790MAPNLPLNSDPACIVFRSFSSFVFLGSVHRLGAGGAG
Ga0208789_1001413Ga0208789_100141314F102533MKSLVKKKIEVQKVNTKKVAQCCAKTSKTIVGCHD
Ga0208789_1003032Ga0208789_10030322F017253MSIFYIGANVGSYTQGRTAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1004217Ga0208789_10042174F087946MLSKQRIPDLIVIVVLGLFLILLNYTGNIGVISNYPFIFLLVMYFVGRGVTWYIINKNAGDIDDGDGSQ
Ga0208789_1004303Ga0208789_10043032F102533MKSLVKKKIEVQKVNTKKVAQCCAKTSTTVVGCHD
Ga0208789_1007737Ga0208789_10077372F087946MLSKQRIPDLIVIAVLGLLLILLNYTGSIGIISDYPFIFLLVMYFIGRAVTWYIINKKMEEDES
Ga0208789_1016143Ga0208789_10161434F017253SFPRMRYSRLAGNVGSYTQGRIAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1018023Ga0208789_10180231F010231LLADVQSAGFAPAFTLSFHDSEYARKPPNAHSLGR
Ga0208789_1018385Ga0208789_10183853F017253MIANVGSYTQGRIAGDLAIADLRFLSSRKAAWAERYTPKTTVAALDG
Ga0208789_1028178Ga0208789_10281782F025315MQNYLLTTCVILLVVVMPLLVLYLKGSWPLRKVIPSLVIIPVFWYFTYTILHELSHAAGTYLVGGKVIAWRLIPRFWLGEFSGAWATPGGFTQRWQQLTSSAFPYLLDIVCLVVAIAVFRRRFSGNPIFVGLVFMLLCLRPAFDVVGETIGFLTGWRGDLYFIQLIAGPFALWSLILISIGLSVVSISSTISHVVRFSKYNIGQNTNGTKQNFIR
Ga0208789_1029455Ga0208789_10294552F017253YSRLAGNVGSYTQGRTAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1029925Ga0208789_10299253F074396MSHFSVKVINKAGEPLRDIGVMIDYGWLGGTEEKRTHSDGWVEFHNRENKSGTIWVHGHSKGSHSLSDGKTYSFTI
Ga0208789_1030679Ga0208789_10306792F025315MQSYLLVTCEILVIVVMPLLVLYLKGNWPLRKIIPSLVVIPVIWYFSYSIVHELSHAAGTYLVGGKVIDYRLIPRFWLGEFRGAWATPGGLTQSWQQLTAHAFPYLMDIVCFVSAILIFRRGSSRNPFVIGIAFMLLCLRPAFNILGETIGLLTGWRGDLYNMQQIVGPFALWSFILFSIGLAIYSTSSTLSHLVRFSKQQIRQNADDTKHNIVQKGEKNDD
Ga0208789_1045897Ga0208789_10458972F069690MTQSEIISRTFRFVYNIPSNFIEEIWSDSPLLANHLKAKFTGFCKSEGYASANAILKFFSSLDESNTEKFCAYASTWIQKHQSN
Ga0208789_1048985Ga0208789_10489851F017253MEALPHSIAGNVGSYTQGRIAGDFLSSRKAARAERCPPKTTAAALDG
Ga0208789_1064225Ga0208789_10642251F074797MNESEPSMRCRENELSVKTAASLAAEEERGGNLFTGYVADVIQGA
Ga0208789_1068633Ga0208789_10686331F064436VTLVPGQTAPAGTAAMLTLTGKFGFTVMLIALEVAGLPVAQSAFEVSTQVTISLVAKVVL
Ga0208789_1083793Ga0208789_10837932F079372ITDNIAKDYPEFTIKEATSVTLNNVVTYEVLVSKGMTTETLLYDKDGKFLKKLEL
Ga0208789_1086307Ga0208789_10863071F081459LKTPNNYRPFEILARLYYSQGEWDAAHEEVTKARKLNPFDRGLAEISGRIEFELKNFDLALDAFIDAFLLATDQKGESTEPVRRMINTLKRINNIDPKDLNARIKSRVEQLQMSTERLELRKENLFRIDTRKELKQIVQKIERDAEKRDNLIQISADLRNFTVFQHMRDEQIFRLSRFAHLDEFMQGE
Ga0208789_1087784Ga0208789_10877841F025315RKPTMQNYLLVTFEILVVVVMPLLVLYLKGNWPLRKVIPLLVIIPVLWYFTYAPIHELSHAAGTYLVGGKVIEYQLIPRFWLGEFGGAWATPGGFTQSWQQLTSSAFPYILDIVSFVVAIFVFRQRFSRNPFFVGLAFMLLCLRPAFDLVGETIGFLTGWRGDLYFIELIAGSFALWSLILISIGL
Ga0208789_1088352Ga0208789_10883521F010231VHSGGFAPAFTLSFHDSECSRKPPNAHSLGRYGAF
Ga0208789_1090380Ga0208789_10903801F027599VPVPREAPPVAAAYQLMVPAEAVAPRVTVPVPQVDPGVTMVIVGMALTVAVTAVLAAV
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