NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027054

3300027054: Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW36 contaminated, 6.7 m (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027054 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0069861 | Gp0053847 | Ga0207424
Sample NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW36 contaminated, 6.7 m (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32964599
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameGroundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeplanetary subsurface zonecontaminated water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)N/ADepth (m)6.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005987Metagenome / Metatranscriptome384Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207424_101008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium681Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207424_101008Ga0207424_1010082F005987MPDPLNLPERKDADGEWHQVVRDVCYWCGCHYLHAEDDRDLVWEPGKDREKACSDDECECHTAPLVGRHRD

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