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Sample 3300027026
3300027026: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (2) (SPAdes)
Overview
Basic Information
IMG/M Taxon OID 3300027026 Open in IMG/M GOLD Reference Gs0053056 | Gp0054374 | Ga0207814 Sample Name Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (2) (SPAdes) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 117816321 Sequencing Scaffolds 1 Novel Protein Genes 1 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. Root1204 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico Type Engineered Taxonomy Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Aerobic Enrichment Media → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
Location Information
Location Bioluminescent Bay, La Paraguera, Puerto Rico Coordinates Lat. (o ) 17.967317 Long. (o ) -67.018833 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F049899 Metagenome 146 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0207814_111755 All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. Root1204 1514 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0207814_111755 Ga0207814_1117552 F049899 RGSVTATIVGALFLTYLGQLVLAVGFETSAQNIVQAIIIIASVGLVEAGRRLRFEWIRFKFWITSPDVEFRIRTTFTRTMTRLGLAKLLDVAPQVRWRWRTAYLRLKKRLDITE
