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Sample 3300026980
3300026980: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (SPAdes)
Overview
Basic Information
IMG/M Taxon OID 3300026980 Open in IMG/M GOLD Reference Gs0053056 | Gp0054741 | Ga0207829 Sample Name Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (SPAdes) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 114973586 Sequencing Scaffolds 2 Novel Protein Genes 2 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria 1 All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico Type Engineered Taxonomy Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Aerobic Enrichment Media → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
Location Information
Location Bioluminescent Bay, La Paraguera, Puerto Rico Coordinates Lat. (o ) 17.967317 Long. (o ) -67.018833 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F015419 Metagenome / Metatranscriptome 255 Y F033243 Metagenome 178 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0207829_100045 Ga0207829_10004591 F015419 MNLIINHKLNMKLELKITDEQGNEHLYNVVRSSDGEPNNLNDFILDALQISEDKRKLPFIITTPNGSEYYPLIKMKYENYGSSILGDKLEALIVRW Ga0207829_100103 Ga0207829_10010325 F033243 MKRKHHDTLGLLKQGPIDLVGHGAEPVLAAGYSTLELERAGLTVEKARELGIPVDAGRCSGVGANVMQLRALLTS
