| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026938 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0055683 | Ga0207610 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 19000951 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 17 |
| Associated Families | 17 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Archaea | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Craurococcus → environmental samples → uncultured Craurococcus sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.2958 | Long. (o) | -89.3799 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001604 | Metagenome / Metatranscriptome | 664 | Y |
| F002315 | Metagenome / Metatranscriptome | 572 | Y |
| F003705 | Metagenome | 473 | Y |
| F003758 | Metagenome / Metatranscriptome | 470 | Y |
| F014051 | Metagenome | 266 | Y |
| F015418 | Metagenome / Metatranscriptome | 255 | Y |
| F015492 | Metagenome / Metatranscriptome | 254 | Y |
| F018801 | Metagenome / Metatranscriptome | 233 | Y |
| F025757 | Metagenome | 200 | N |
| F037759 | Metagenome / Metatranscriptome | 167 | N |
| F039353 | Metagenome / Metatranscriptome | 164 | Y |
| F045732 | Metagenome / Metatranscriptome | 152 | N |
| F062126 | Metagenome / Metatranscriptome | 131 | Y |
| F068551 | Metagenome | 124 | N |
| F072513 | Metagenome / Metatranscriptome | 121 | N |
| F075479 | Metagenome | 119 | N |
| F083399 | Metagenome | 113 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207610_100196 | Not Available | 983 | Open in IMG/M |
| Ga0207610_100205 | All Organisms → cellular organisms → Archaea | 972 | Open in IMG/M |
| Ga0207610_100228 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 952 | Open in IMG/M |
| Ga0207610_100470 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 805 | Open in IMG/M |
| Ga0207610_100503 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Craurococcus → environmental samples → uncultured Craurococcus sp. | 793 | Open in IMG/M |
| Ga0207610_100725 | Not Available | 732 | Open in IMG/M |
| Ga0207610_101005 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 673 | Open in IMG/M |
| Ga0207610_101025 | All Organisms → cellular organisms → Archaea | 670 | Open in IMG/M |
| Ga0207610_101092 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium | 660 | Open in IMG/M |
| Ga0207610_101104 | All Organisms → cellular organisms → Bacteria | 658 | Open in IMG/M |
| Ga0207610_101564 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 601 | Open in IMG/M |
| Ga0207610_101746 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum | 586 | Open in IMG/M |
| Ga0207610_102565 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria | 527 | Open in IMG/M |
| Ga0207610_102620 | Not Available | 525 | Open in IMG/M |
| Ga0207610_102831 | Not Available | 514 | Open in IMG/M |
| Ga0207610_102916 | Not Available | 510 | Open in IMG/M |
| Ga0207610_103091 | All Organisms → cellular organisms → Archaea | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207610_100196 | Ga0207610_1001962 | F002315 | MKHVAVLSMAMLATVTFVADKKTYRYTCKGGAFTVTAAVEASGRWSKAEPVVLQIGSEPLQTLTADPDAPDADSFSNKDYEFYALKAFITLTRKSHGVVVKTYNACRVE |
| Ga0207610_100205 | Ga0207610_1002051 | F072513 | AAHAIIVNIMSHTAVIFSAIGYGLGGRYINFQIPPLK |
| Ga0207610_100228 | Ga0207610_1002282 | F037759 | LSGAARAQSPELGAPSIGILPPSDILASVSYLGLDPSGEPVRRGAYYMLHAFDRAGIELLVVVDAQFGDVLFMAPALNTSLTPPYTRAARIIQVAPESGDQQKR |
| Ga0207610_100470 | Ga0207610_1004701 | F083399 | MVEESAVSGDARPWGFFATFVLGAIALLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAIGDAMSWLAGRSVVDRFQTDIY |
| Ga0207610_100503 | Ga0207610_1005031 | F003758 | LRAFENAEDEVLTNTLKGAPRLNVPSLFRPQFMEAVQKEHPEYFADLPRLK |
| Ga0207610_100725 | Ga0207610_1007251 | F014051 | KALKDFLDIAFWAVKDDGLPRNKLEATASLMKKIGAIKPDKEPVTFENLVDPSVWKDANAMVR |
| Ga0207610_101005 | Ga0207610_1010052 | F015492 | REVMAMRHQIWVFAAAMLALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIYWKSKDGSQTTIVRGQGLRAFQTIGEFRIEAAGDDSRSFRYGYVLFRLKSEKSAQEDKI |
| Ga0207610_101025 | Ga0207610_1010252 | F068551 | IRKMQLGVIVIFIFVILGIVFFIVFGIGYFKTENPQNENLQNRSTAVFPNPDSIPPECKYTPNDLLCQFQLEKQKMKLSQNE |
| Ga0207610_101092 | Ga0207610_1010922 | F025757 | WSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA |
| Ga0207610_101104 | Ga0207610_1011042 | F062126 | LNTLGYQPRESRNEAGVEYEIVLRAADTRAITTRVTLSKDGALVWLVAWLKRVPTNRTISGNAVLGMLIENDAIGPTHFSYNERVRWFFLNSPVINQDLTPDRLRGEIDHVALIAARTEPLWDFERWR |
| Ga0207610_101564 | Ga0207610_1015641 | F039353 | KSREQPLPTTAVVGFKSAGAAKDRSLAANIDADRALISFKEMPITQVEANHNALKVARGEIGGLAVEAATLINDFEGRQNPALLDIVEFDGFIWEPDRNRGH |
| Ga0207610_101746 | Ga0207610_1017462 | F018801 | MGLTILSIPFIALGVFLKPYALENSRCIGFAGLGPYCFEQASSMPEVIKYGSVAVGFAFLYGG |
| Ga0207610_102565 | Ga0207610_1025651 | F003705 | RISNHPFAQAALDSDVPVEAYIAALGTLDDQLDLNLYLSHLHQARDEIVRTALRLISGDRARHVAFAWAFLGSRVPALDARGRTAVIEAVRDVLANVILAGYRSTWLLPEKSREPWLAAEEETARQGLGASTQVQERSVLRATIAQVRERFAAWKLELPRIDHPEIGTI |
| Ga0207610_102620 | Ga0207610_1026202 | F001604 | MTDILDNAPVSGEEPTLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWINTGGRSWLEERRRKRNA |
| Ga0207610_102831 | Ga0207610_1028311 | F045732 | RRRRVFIDTHKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWIATVIDWARRAA |
| Ga0207610_102916 | Ga0207610_1029161 | F015418 | MSIVSRRTFTKGLLASALVPGTSAFGQPNDPASIAIIDTPQNAAKVAAKLAAQNVKVVVRFFARKPQPGLREKVMASD |
| Ga0207610_103091 | Ga0207610_1030912 | F075479 | MVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |