NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026936

3300026936: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026936 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0055681 | Ga0207585
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size20553993
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea3
Not Available3
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001584Metagenome / Metatranscriptome668Y
F014308Metagenome / Metatranscriptome264Y
F026602Metagenome / Metatranscriptome197N
F037804Metagenome167N
F057488Metagenome136N
F057496Metagenome / Metatranscriptome136N
F063579Metagenome / Metatranscriptome129Y
F072513Metagenome / Metatranscriptome121N
F084388Metagenome112N
F101572Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207585_100212All Organisms → cellular organisms → Archaea1028Open in IMG/M
Ga0207585_100482All Organisms → cellular organisms → Archaea844Open in IMG/M
Ga0207585_100652Not Available777Open in IMG/M
Ga0207585_100768Not Available738Open in IMG/M
Ga0207585_101219All Organisms → cellular organisms → Bacteria656Open in IMG/M
Ga0207585_101296All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon647Open in IMG/M
Ga0207585_102585Not Available540Open in IMG/M
Ga0207585_102880All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium523Open in IMG/M
Ga0207585_103015All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria516Open in IMG/M
Ga0207585_103265All Organisms → cellular organisms → Archaea506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207585_100212Ga0207585_1002121F084388VKGVRINFFVSYDEETPFAEWNMDHKELGSAGGMITNVKTSSDSFVLKGFEAFDSICDVETPSDVKLSGNCGEGTVRLVSDNGNKGTFASNVKCG
Ga0207585_100482Ga0207585_1004822F026602LILASMHVFAGRLYAIEQPSKMEGINEEECNKIFNCKIISEDVLKYPDIVNPFTKNEDIAKTLVNNANDSKIMTEHTCQKLMDVDIVKKKDQKIGEQAPKYLVCLP
Ga0207585_100652Ga0207585_1006522F037804MDDIEHDLEEFANYILEAIKQSEGEISNWDEIIRKWKEIEKKKDLALRKKLKXALF
Ga0207585_100768Ga0207585_1007681F057488IGLIPGATAQLAVGPVPIMSSINGIPITVSVTSWITVNSVGDETTVDARIFADLIDLQKKFSDVVDSFKRSARNCNRSADGQNPVVSFKSGSLWPRNDQLIMFVRGDIDIWSCSVGPPQSAIRWEKTKVSFLTLKLPVRRTWRNVKRNMDGTQPFHGTLLVSLAEKDGANVALRNTEPNLRLDGEPTFATNANLSLAKTDMNDKVSKTLRSAIDLTKLKDVLPKELQKFNMTVNSARFRDRGGHA
Ga0207585_101219Ga0207585_1012191F001584GRLGGPIRFEFYRDSTTRPKTDIQSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR
Ga0207585_101296Ga0207585_1012962F072513VIPNRRWGLDAVGVVVNHIMTAGIAAHAIIVNIMSHTAVIFSAIGYGLGGRYINFQIPPL
Ga0207585_102585Ga0207585_1025851F101572MLGDHGLTTALLDVLANGFAIVALVAKHLFGIAVDIVHQRRNGGDIVGLAGRDHDADGQALGIGACIDLGREAAERTAERVTLGPPLWMARPSQLSW
Ga0207585_102880Ga0207585_1028802F063579MAKKIDPKAKAKRQKIFAAIGGVILLGLLAFQVPRTMKMLHPAEESTSSSAPAATTATTPTSPIAAPSLA
Ga0207585_103015Ga0207585_1030152F014308FPPELEVAFMSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKVA
Ga0207585_103265Ga0207585_1032652F057496EDHSSAYCKDEYVFGDKGEPLRLSHLIAFNVIEDAEHISGILTVEFDYYSDDDSIKYRDMHYSNPRLIKHIEGNPTVMKNIDAYLRNNLLESEYGLKL
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