NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026811

3300026811: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026811 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072098 | Ga0207529
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26383494
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2
Not Available8
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC68601
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F000569Metagenome / Metatranscriptome1018Y
F001033Metagenome / Metatranscriptome799Y
F002616Metagenome / Metatranscriptome543Y
F009830Metagenome / Metatranscriptome312Y
F014213Metagenome265Y
F020078Metagenome / Metatranscriptome226Y
F021340Metagenome219Y
F023901Metagenome / Metatranscriptome208N
F024545Metagenome / Metatranscriptome205Y
F028554Metagenome / Metatranscriptome191N
F033614Metagenome / Metatranscriptome177Y
F038480Metagenome166Y
F040398Metagenome / Metatranscriptome162Y
F041068Metagenome160N
F045189Metagenome153Y
F052694Metagenome / Metatranscriptome142N
F063998Metagenome / Metatranscriptome129Y
F082749Metagenome / Metatranscriptome113Y
F085323Metagenome111N
F089000Metagenome109N
F092372Metagenome / Metatranscriptome107N
F097297Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207529_100048All Organisms → cellular organisms → Archaea1907Open in IMG/M
Ga0207529_100483All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium1066Open in IMG/M
Ga0207529_100602All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1011Open in IMG/M
Ga0207529_100840All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium913Open in IMG/M
Ga0207529_101050Not Available859Open in IMG/M
Ga0207529_101107All Organisms → cellular organisms → Bacteria845Open in IMG/M
Ga0207529_101232All Organisms → cellular organisms → Bacteria → Proteobacteria816Open in IMG/M
Ga0207529_101334All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium795Open in IMG/M
Ga0207529_101813All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae722Open in IMG/M
Ga0207529_102032Not Available697Open in IMG/M
Ga0207529_102186Not Available681Open in IMG/M
Ga0207529_102503Not Available651Open in IMG/M
Ga0207529_102916Not Available621Open in IMG/M
Ga0207529_102974All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium617Open in IMG/M
Ga0207529_103009Not Available614Open in IMG/M
Ga0207529_103028All Organisms → cellular organisms → Bacteria613Open in IMG/M
Ga0207529_104405All Organisms → cellular organisms → Bacteria541Open in IMG/M
Ga0207529_104899All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860521Open in IMG/M
Ga0207529_105076All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium515Open in IMG/M
Ga0207529_105115All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium513Open in IMG/M
Ga0207529_105154Not Available512Open in IMG/M
Ga0207529_105277Not Available507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207529_100047Ga0207529_1000471F082749FAANATGEGRLAPAFARRGGMDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMAFMLVRFINYFEALWRESLDQFFCDEIGGSHIARLGERGLPVNGHKQVLNASPAKAHNVRS
Ga0207529_100048Ga0207529_1000482F023901MRSTHNEQGQTCEGGVPLDPKKFGGYEFAINTKGWDAKREPTHNCHDQHKSGLIPTNLENDKAVRLRQTVKDESGKVHQIGEIDYMDGNGFHKVMDIFDSSPNPWMVDRNLYETKSYFWIRNNGSGYITVMDVSLEILS
Ga0207529_100483Ga0207529_1004832F097297AYGLAVRMADAIGDASAATQDVINEKEFKKGAAHESAAVVIVDNPAPQTVVHENRNAAVAEITPDEEAAVLATVAAVLAKIDPQPPTADDNVTRPEPVREDAELSAAKRAIIHEWESWSALHSDELGDPKVAEYFFRHLQANKPKLLIFSSQDKQGIVRSALGHLR
Ga0207529_100602Ga0207529_1006022F040398YKSLVAGITDAAVVSNEFEAVMPSNIKVLAKGSSAVPNFLRLCVATSGKVLSERRDDLVKFVAAEMDAYKFALANRAETIKVSQEMTHAKPDDKRAEFITDEAIKDKQIDPTLSIPLDRLDWMQNLFLKAGVIKQTVPIESIVDKSVNADAAKIAGK
Ga0207529_100840Ga0207529_1008402F001033MCGHFLITRLTIAVFVFLILGVASVIHAERPDSTAGTSNAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAISFTGKAVTHKDGRTHIVLGRATPSSGNRGGVTFSIITDDAKIVFNTSYHFGT
Ga0207529_101050Ga0207529_1010503F024545CSAMQRTKKPKVQIKRQKGVARLGYRIYIDGTYMGTGSTRASARDGAQRMLVIYAT
Ga0207529_101107Ga0207529_1011073F045189LGVGVVLPANVPALVLSDAWRTSAPMPIAPVPKHVLLSVFLV
Ga0207529_101232Ga0207529_1012322F085323VPVWLQIIVVVVCATAMVIAADAEDHCGDTTAKCIVAIGKG
Ga0207529_101334Ga0207529_1013342F009830PITSKGLIEMLDKRLEQEQARRVDERLARVVRIIVEQYDGDVKAFVDSIRYRTEVNRKAEAASDHGDEVPLRKCPSTTKIIGRISSAHYS
Ga0207529_101813Ga0207529_1018132F028554AGEGRRAIIVMAALTGLFFLAAFVTAGSLLSTDPRPMSSLSKVTQLPPTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFK
Ga0207529_102032Ga0207529_1020321F089000MGEPTPATPASKYFAATVAMIAGAFVFAIGAGLLPIPGGPSNLHGPLWLLLCVGLAFFLAGLAILIQMLSHANDSGDLPA
Ga0207529_102186Ga0207529_1021862F063998VEEDQTVVLTVVPGETEAEVLCGLLRANGIECGYRDTDAIDSPLEDFMTSGPREILVHEADLE
Ga0207529_102503Ga0207529_1025031F002616TPRMQDTPMPNSFPNWTSRIVIAGRIAEYRRPENWNESTMPGDYHLPFGRVEAQAKAARWLWQSYII
Ga0207529_102916Ga0207529_1029161F020078MHSATRFCWQSGVIALATIIFAFLVPGIALCKVVSLTSIASAIAITTLVAGFGLYLAGQLIEKRTPQSERVDHYLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAGCGVA
Ga0207529_102974Ga0207529_1029742F014213RVDPQLTPHDHVVAAQAIIRGKRGVINAAMVWSRDGRGQTFATGNYTFLRMGRGVTYKLLDNVWRRLVG
Ga0207529_103009Ga0207529_1030091F052694TVEPYYLVEHSFEERSMSKSSKFVSLTLVVATLIVGTSTAWSGPLAKGTNAHVVDDGTVSWTLPAGQCPAAPDGLTGSGERQRVTITKVNADGSTTIIINDVVRGTAWDATGTYKFVYENHSIDQVPAGGGVHQISMEDNFILNGNGSVGHLAVGFNWAWTYTDPNGPFDVLPLANLVERTTRGEPLLCDPI
Ga0207529_103028Ga0207529_1030281F021340WHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLRDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQERPATFTWGK
Ga0207529_104405Ga0207529_1044051F000268MLMRVVAVMLLLSAGIAAEAMSYSFVCKASGRLGGPIRFEFYHDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR
Ga0207529_104899Ga0207529_1048991F092372MRARAAIVAGLLAAAVPLDSPAQAQFSPQGIIGGVTRPLRQMLGNFGHYPRSHRHRSSGGARAAAPVPDRDAAQSTVKSRLGRAGPAAWVTAYEDVLGFAFWPDDYGAQFRSRGFDVIADTITGRFDRTRESTRVATTGAARSDGGSDVFVH
Ga0207529_105076Ga0207529_1050761F033614AGFYRTWNANSTALKLMNGQGISYWLEFNPSTFRVGDGSARPSLHPLSFAWTWEWSAVDPDIIYFLNGNQLAKYNKVTTLVTNLGGPPNGDTVTMHVAVVGQDSWVCSTAGAGTQNSYTKIYCLNPNNPSQTKFIDVLNKTINGIVQSDPKWPTSAAGQTIGIHSMYGSAA
Ga0207529_105115Ga0207529_1051152F041068MTTAATGDEPGENATMVGQEMSGWLRGVEGFEGMLMLYRPGTTIGLTFWEGREVAERALPLRMQFLERIASVADVQIDRVEAFDVVVARPVARQD
Ga0207529_105154Ga0207529_1051541F038480PNMEGACRVVADRGSSQMKLGRKSGKIVRRDTMKAILVSIVLYFAATAAHSMPISVLNANGLSATIPISDQCGDRCGSSRSYVRDRRTVMAGYSGGYVLVRDPLIQRRPYCPFGSYVACIMSGTYCIDLCH
Ga0207529_105277Ga0207529_1052771F000569DIKKVWLPGAASCLLFFGFYWVLIWLPFDKTRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGVPYTLPHFLAGFSVTLAFIVVGGLLLVLGAWPFCRPHLREQLP
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