| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026808 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0056002 | Ga0207581 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-10 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 25037330 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.2958 | Long. (o) | -89.3799 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014308 | Metagenome / Metatranscriptome | 264 | Y |
| F022556 | Metagenome | 214 | Y |
| F033870 | Metagenome / Metatranscriptome | 176 | Y |
| F089577 | Metagenome / Metatranscriptome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207581_100520 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales | 733 | Open in IMG/M |
| Ga0207581_102144 | All Organisms → cellular organisms → Bacteria | 547 | Open in IMG/M |
| Ga0207581_102940 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium | 509 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207581_100520 | Ga0207581_1005201 | F033870 | MNVSMEAPRTPQHDLVAMTAALRGVLLQRVEQGISSSGLTNYFMYIVAKRLMFAGPQTSSSLSEQLRQNPQIIGENLRLMLEQQMVQQEGETWAITDAGRKAMTAANDSGGQVLEDIRGAIGASACDQLV |
| Ga0207581_102144 | Ga0207581_1021442 | F022556 | DRELTTASSHACAQGKDLWTLITNDIDHEKIHTGQILEARYESRITASRMQRLLAEWLEERARLIGSLIGLTDEQFNRETVPGEWTYRVVAKHVLSRAGLVETIAADQASRMEAP |
| Ga0207581_102747 | Ga0207581_1027472 | F014308 | MTFMSGSTIGIQLIMPKTGTSPKAKPEQQASEREAATQPVVKAPPPP |
| Ga0207581_102940 | Ga0207581_1029402 | F089577 | LVIQGGADPLLVSHGDESGPKKLRFSAEDDYQRRHGHGTAVWLSAF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |