NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026793

3300026793: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026793 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072087 | Ga0207441
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26805596
Sequencing Scaffolds28
Novel Protein Genes29
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
Not Available13
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14621
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Archaea4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT04311
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001033Metagenome / Metatranscriptome799Y
F002896Metagenome / Metatranscriptome522N
F010272Metagenome / Metatranscriptome306Y
F010567Metagenome / Metatranscriptome302Y
F015418Metagenome / Metatranscriptome255Y
F015505Metagenome254Y
F017005Metagenome / Metatranscriptome243Y
F025530Metagenome201Y
F026346Metagenome / Metatranscriptome198Y
F026499Metagenome197N
F026641Metagenome / Metatranscriptome197Y
F032294Metagenome / Metatranscriptome180Y
F034172Metagenome / Metatranscriptome175Y
F037757Metagenome / Metatranscriptome167Y
F038480Metagenome166Y
F046734Metagenome / Metatranscriptome151N
F047102Metagenome / Metatranscriptome150Y
F048144Metagenome148N
F056406Metagenome137N
F058487Metagenome / Metatranscriptome135Y
F059295Metagenome134Y
F065229Metagenome / Metatranscriptome128Y
F075479Metagenome119N
F083220Metagenome113Y
F084328Metagenome112N
F090606Metagenome108Y
F094116Metagenome106Y
F098176Metagenome104N
F105773Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207441_100042All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2488Open in IMG/M
Ga0207441_100994Not Available989Open in IMG/M
Ga0207441_101008Not Available983Open in IMG/M
Ga0207441_101148All Organisms → cellular organisms → Bacteria940Open in IMG/M
Ga0207441_101175All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462934Open in IMG/M
Ga0207441_101309All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria899Open in IMG/M
Ga0207441_101529All Organisms → cellular organisms → Archaea853Open in IMG/M
Ga0207441_101582All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium843Open in IMG/M
Ga0207441_101688Not Available826Open in IMG/M
Ga0207441_102601All Organisms → cellular organisms → Archaea717Open in IMG/M
Ga0207441_103176Not Available669Open in IMG/M
Ga0207441_103662Not Available639Open in IMG/M
Ga0207441_103721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431635Open in IMG/M
Ga0207441_103741Not Available633Open in IMG/M
Ga0207441_104355Not Available599Open in IMG/M
Ga0207441_104444Not Available594Open in IMG/M
Ga0207441_104456All Organisms → cellular organisms → Bacteria594Open in IMG/M
Ga0207441_104479All Organisms → cellular organisms → Bacteria → Acidobacteria593Open in IMG/M
Ga0207441_104509Not Available591Open in IMG/M
Ga0207441_104806Not Available578Open in IMG/M
Ga0207441_104858Not Available575Open in IMG/M
Ga0207441_105100All Organisms → cellular organisms → Archaea566Open in IMG/M
Ga0207441_105129Not Available565Open in IMG/M
Ga0207441_105582All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium548Open in IMG/M
Ga0207441_105657All Organisms → cellular organisms → Archaea546Open in IMG/M
Ga0207441_106251All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium527Open in IMG/M
Ga0207441_106612Not Available516Open in IMG/M
Ga0207441_107057All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207441_100042Ga0207441_1000421F026346GSFLSTDPQAMSSVAKVTPLPRTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK
Ga0207441_100940Ga0207441_1009401F090606PVAPEVKTPVAKVETAPIAKEDKPDAARPQADDGGKPGATPNCEKELRRTADLLRFFANRIQGGEDAQSVVADMRQQEKKISAVCD
Ga0207441_100994Ga0207441_1009941F026499MKFIEPAFDTGGDLWRPPLNVPDSDAHALNEKFARQSAELRLRLTEVLELHNVQQRQANELQDRYDDIDRLSQTVSALQEAVNQYKMGTAAAEDKIILLESEKAVLQAQLDVALEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQQKSMLEIRLQEKEALAATQAATIKQLEGVRDELDKRFRVIEALLTSEREAAERKTRRTADGPPAAAG
Ga0207441_101008Ga0207441_1010081F034172MRTIFVFLVAGLIVLLGGASYAADLRLEHKRTHARGAGTFDQRMRVVEQKPYCGDCEAPIGRTHSANVARLRFINWPFWQERCAVGACGVYYPVMRSCAFWGLGCI
Ga0207441_101148Ga0207441_1011481F047102FSIAIPESRRCRERALECRTVADRLRLQNARAQMLKVAADYERMARDAKQREIAQGLSYLSVLVVRQRQAA
Ga0207441_101175Ga0207441_1011752F065229MLLIRFAISIFALMLLGLAVSLSTAQSEQEIHAATAATFTHQ
Ga0207441_101309Ga0207441_1013092F038480MKTVLVSIGLCLAATAVHSMPLSLLNANVAQPVIAVSDQCGDRCGSSRSYVKDRRSGVGGYSGGYVLVRDPLIQRRPFCPFGSYVACVVSGTYCVDLCH
Ga0207441_101529Ga0207441_1015292F010272MNHERKLILIAIGAFVTLSLFVFPSTNMIAYSQSENKTQGKEQAQEKLFELAQKFNKILKDSNVNLTLPQNGDLSSKLQELKDSGAFKELSEKFSQAVQELGQGNKTEELKQEAGADLSTLMQKLQSLRNNST
Ga0207441_101582Ga0207441_1015821F017005AQPMKAAELVLACFLLFGACLVWPLLSIANRPVLILGVPALVVYLFAVWAAIVAVLIALARLVRPPENGA
Ga0207441_101688Ga0207441_1016881F025530MSDMRISTSTTMQIGEAARDNIAAGIWFAVLAGSLFLTAHGQSILMTAGLMLELTAAYSTFVLCGKGARSLFVHAVPYAFALAGAVFLCLAPDFPNAVQASLVFLGVTALMHGSVVYSALKNSPESEDPAYASAT
Ga0207441_102601Ga0207441_1026011F002896GMDKMNEDTILHFYRILENSLLESDISKINEEDIDAWSQSFKKVVRESREKSGKGVFVPFLMWKLGELSPVEASKYLVNRKQDECRVSYDHNNVEYILRVMALMFMSWSVTNLKRKTQNGHCQNIDHPHGDTNPRLCKEGTIFHQELYNECVKTFKDLLIHSDAQHH
Ga0207441_103176Ga0207441_1031761F105773MIAELFKKFYEINDVSFKQVQKEHEFLRTYLQKMTLQIPDPALSDLTAGEMMDAFERLMEKIEMAV
Ga0207441_103662Ga0207441_1036622F084328DACPDWEAPAFTKLPIASRTGSGANVANDAPRAIEPEAPGQPLSKLGFSFEMSFPMSSRSEK
Ga0207441_103721Ga0207441_1037211F010567CYDLFMLSLGLAKELRNAGFPNIQDLQHRQGRQFLASDGRVSVYSLGELAPPENWFIPTLEELIEACGENFGSLDRQHGGWLASANFDQSCFAKTPAEAVARLWLALQKR
Ga0207441_103741Ga0207441_1037412F094116GTPSATGFVLGQEDIQNLPGFEEAFDVAATQIRVADLEERTGLDFGDIKKFDHFAAGGASGTLELPSIEGIVQRAKIVRNGNDIVV
Ga0207441_104355Ga0207441_1043552F037757VQQAIRRYVPFWISLLVGIALWEAAGRSTSAAFMVPFSETLRRLWQLIVAGDFFKQLADS
Ga0207441_104444Ga0207441_1044442F056406QYTGSIIIVPTRGEDCRQMMLDNRTGRMWDKGIVNCYEAVSRPEKGQRGGMSSLRMNAIGKAFNRRDE
Ga0207441_104456Ga0207441_1044562F058487PGGPHGYATSMARRSAMGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVTLTPAAIRILGL
Ga0207441_104479Ga0207441_1044792F032294MNVYVNPRGGVEEDYPLHAHTRNFLDKLKAKDRKTNAPMEVGYNSALPALLALEAMKDNKVLGWDPVARKTKAL
Ga0207441_104509Ga0207441_1045091F026641MSETSDQLLRGFQAQEKRFLERRFPLRFASENPTLRELYRQAKRLRWN
Ga0207441_104806Ga0207441_1048062F015418MSIVSRRTFTKGLLASALVPGTSAFGQPNDPASIAIIDTPQNAAKVAAKLAAQNVKVVVRFFARKPQPGL
Ga0207441_104858Ga0207441_1048582F048144MVLPAKYPSSDNNELHEKLKWSFSCAIDKSEFLKLSKDIKTIEGWYREAKKTSDNISNPSLVSGEMIKELLNHVYPHYTNIIIEKTDINIKSTDGGVQSDFDLGIVTMRPYVEFVKIVNGESMPTSKFTFQLDIRTYISIFKAVNNSASE
Ga0207441_105100Ga0207441_1051001F046734ELLIQEKGDIGMGNGSTAIVFAKASDYSVKNAPLDLYVKYRMNEDDSLNVTSQQDTTIGKEKAVRIDGNKNNNASNIRLLEYLLLHNDEPYVIRYIASMDDFERNLPAFELMVKSFTFGTNATDSKQT
Ga0207441_105129Ga0207441_1051291F098176ANGLSGDGIICGMSIVGTSEAYWLTGGGFTGWHQIHHEDENIALSTAAQLPPQCALVASYRNTSEVTVPRGRKRNRMYLGLLRADLLENDGTIIAGDATAVRAAMNELNTALEAITDADPIFAPQGLAVVSPTAGECYEVNEVGCGEAVDTHRSRRQKEPENMIWQAAS
Ga0207441_105582Ga0207441_1055821F001033SVIHAERPHSTAGTSNTGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQAGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFGT
Ga0207441_105657Ga0207441_1056571F075479DINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN
Ga0207441_106251Ga0207441_1062511F083220HVLVVGKDAWICAAAGSAGQNTYTQIYCLNPNDPSQHKFIDILKKTINGIAQHDPHWPTSAAGQTIGIHAMYGSAAGAWLDVGFVHHSWGVNGDSVFNLSTNTWSLKTNADMYSSGHSSIGGKFVNGSGSINGMYSGGACLRDPSNLMDATRYTFIMQPPSTATGWHDGEHSSWF
Ga0207441_106612Ga0207441_1066122F015505MGTINDQTTEVSSGTYFAHLFKVDADQFQLLAQKPRFHRDSDYLNRPYELSDLMRQA
Ga0207441_107057Ga0207441_1070571F059295VERLYFVAAMGAVVYAAFFAALIAMPIYGGAAYDKNGYQPFNAPVPIFAKKWDANITAFSIQLLILVAGLLTVSGAFAG
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