NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026772

3300026772: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026772 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095510 | Gp0072086 | Ga0207596
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A2-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size26628610
Sequencing Scaffolds41
Novel Protein Genes41
Associated Families40

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14621
Not Available14
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-171
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL00581
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes elegans1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeagricultural fieldagricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F002103Metagenome / Metatranscriptome593Y
F002603Metagenome / Metatranscriptome544Y
F003395Metagenome / Metatranscriptome489Y
F006477Metagenome / Metatranscriptome372Y
F006565Metagenome / Metatranscriptome370Y
F006812Metagenome / Metatranscriptome364Y
F008973Metagenome325Y
F011852Metagenome / Metatranscriptome286Y
F017166Metagenome / Metatranscriptome242Y
F017314Metagenome / Metatranscriptome241Y
F017759Metagenome239N
F019867Metagenome227Y
F021340Metagenome219Y
F022685Metagenome / Metatranscriptome213N
F024822Metagenome / Metatranscriptome204N
F024907Metagenome / Metatranscriptome204Y
F025086Metagenome / Metatranscriptome203Y
F025757Metagenome200N
F028554Metagenome / Metatranscriptome191N
F029379Metagenome / Metatranscriptome188Y
F030160Metagenome / Metatranscriptome186Y
F033787Metagenome / Metatranscriptome176N
F034121Metagenome / Metatranscriptome175N
F036876Metagenome / Metatranscriptome169Y
F040358Metagenome / Metatranscriptome162N
F045732Metagenome / Metatranscriptome152N
F048418Metagenome / Metatranscriptome148Y
F049708Metagenome / Metatranscriptome146Y
F051003Metagenome144Y
F063850Metagenome129N
F063987Metagenome / Metatranscriptome129N
F065229Metagenome / Metatranscriptome128Y
F067220Metagenome / Metatranscriptome126N
F067256Metagenome / Metatranscriptome126Y
F071393Metagenome122N
F080278Metagenome / Metatranscriptome115Y
F081911Metagenome114N
F083399Metagenome113N
F101509Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207596_100016All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3676Open in IMG/M
Ga0207596_100042All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14622953Open in IMG/M
Ga0207596_100459Not Available1540Open in IMG/M
Ga0207596_100663All Organisms → cellular organisms → Bacteria → Proteobacteria1365Open in IMG/M
Ga0207596_100697All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-171334Open in IMG/M
Ga0207596_100705All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1328Open in IMG/M
Ga0207596_100810All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1250Open in IMG/M
Ga0207596_100911Not Available1183Open in IMG/M
Ga0207596_100930Not Available1177Open in IMG/M
Ga0207596_101216All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1049Open in IMG/M
Ga0207596_101639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi923Open in IMG/M
Ga0207596_101680Not Available913Open in IMG/M
Ga0207596_102025All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria837Open in IMG/M
Ga0207596_102033All Organisms → cellular organisms → Bacteria835Open in IMG/M
Ga0207596_102456All Organisms → cellular organisms → Bacteria → Acidobacteria764Open in IMG/M
Ga0207596_102460All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria764Open in IMG/M
Ga0207596_102461All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058764Open in IMG/M
Ga0207596_102579All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes elegans746Open in IMG/M
Ga0207596_102595Not Available744Open in IMG/M
Ga0207596_102683Not Available731Open in IMG/M
Ga0207596_102911All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes706Open in IMG/M
Ga0207596_103049Not Available693Open in IMG/M
Ga0207596_103215Not Available678Open in IMG/M
Ga0207596_103234All Organisms → cellular organisms → Bacteria675Open in IMG/M
Ga0207596_103382All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium663Open in IMG/M
Ga0207596_103562All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium648Open in IMG/M
Ga0207596_103563All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
Ga0207596_103576Not Available646Open in IMG/M
Ga0207596_103741Not Available634Open in IMG/M
Ga0207596_103830Not Available628Open in IMG/M
Ga0207596_104329All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria596Open in IMG/M
Ga0207596_104422All Organisms → cellular organisms → Bacteria591Open in IMG/M
Ga0207596_104497Not Available585Open in IMG/M
Ga0207596_104730All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium574Open in IMG/M
Ga0207596_104851All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium568Open in IMG/M
Ga0207596_105077All Organisms → cellular organisms → Bacteria558Open in IMG/M
Ga0207596_105082All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium558Open in IMG/M
Ga0207596_105618Not Available534Open in IMG/M
Ga0207596_106499All Organisms → cellular organisms → Bacteria502Open in IMG/M
Ga0207596_106524Not Available501Open in IMG/M
Ga0207596_106588All Organisms → cellular organisms → Bacteria500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207596_100016Ga0207596_1000162F017759LLFGVVVGLLNSECPQQDRAYESKYGADSQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSILRGNDSAPSPRKKIYPSIKRMMTSVARRICRTAKNARTAATSHP
Ga0207596_100042Ga0207596_1000424F021340LQTFQAQRTIARSNEARSQFCHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLRDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQERPATFTWGK
Ga0207596_100459Ga0207596_1004594F045732DTHKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWIATVIDWARRAA
Ga0207596_100663Ga0207596_1006633F083399MVEESAVSGDARPWGFFATFVLGAIALLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAI
Ga0207596_100697Ga0207596_1006971F025757MSYSASLSLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA
Ga0207596_100705Ga0207596_1007051F028554VLQDQVNFLKGQMRKAKQVRNRALSAGEGRRAIIVTAALTGLFLLAAFVTAGSFLSTDPQAMSSVAKVTPLPRTEGGEAASRVASIVMETDKKGRCEERQLDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK
Ga0207596_100810Ga0207596_1008103F048418RRQAAAHAIDWLGLWALSVAFCAIVLAGIAYFMIGDNTGASCILVGAAAIIAIVVRFGTDRDEARDEN
Ga0207596_100911Ga0207596_1009112F022685MNLMKAILGLCLGLALMAALQTVGVWSLQEHIKSQSDAGLPIGNTPVVGNFDADALKNGILPKYGPIDTSEGQRLAIEGAARRIDLQNRAVQKYLPR
Ga0207596_100930Ga0207596_1009301F030160MASSGAKLAGTMSEKVEQRVSVSVVAVRAESYSAADDSIVISLRTKYSTAERTYSVPVECLQDLIVGLRQLSYLHPQWRLKKPTGRTESLLPLEPPVAVD
Ga0207596_101216Ga0207596_1012163F002603MTAILVRFQNESVKFDDVEERRVLTTLGVIYEGGSLHGKTADFPSRDLERVVLHVHWRNRHFFQTYERTICVDIRSQRTIFRCAGTFKPNNSSWWERLLAVLRIRKMKAIVI
Ga0207596_101639Ga0207596_1016391F024822VRQLFIRVAGVILCALALSGCVDSAGPLLSEAQPVLGERLRLQFYSLSKGTADEPEQATYKWDRGTYQRTGGGMTDIGSFSVHPLARDIFVVQSASAKRPGMFEYAIARRLVDGVYQVIAVDEADAGQVTRARFCKRASDSSCRIQTRNQLYAFARATAERRRGQGGLVLRLADGVAESS
Ga0207596_101680Ga0207596_1016801F019867MHVTPLSAATILVFATASPLHAQGIEVFGGYSVNSDAVQNRPAILVADQKVSPFFSHGSGPTGFEASFKHDMRNGLGIKVDVSGYSDTFPPGPAAYCQTDGSTSGSACGTGLTFQATGRAFYLTAGPEWKIRRDKRFAPFAQTLVGIVYTRSTFMMNGSDVQYANPFTGGVLLFTSAGFPPDRSIDYADAHADAGLALAI
Ga0207596_102025Ga0207596_1020252F040358MRIAIFALAILAGSGAAEARQVEVVSTSPRHIEIAAWCTAGSNCQQEASDVAQGYCHGPDYPRRALYVRSGLVERGFFSERVIFVYKCNRRSIFCEA
Ga0207596_102033Ga0207596_1020331F049708SFIPTDKILPRPIEESWELVRDILWAGMTIISIGLLEVMSPLATPFASASGLRRGDVAEILLAVILVAVAVFSALRLRRKDLTPRWRGTHTFFLLLALTLVAMVRFTLYSWSHFA
Ga0207596_102456Ga0207596_1024562F063987MKFVSRTKSMAVPHQILGASTNEKRELLVCGRSLIARLTIAVFVFQILGVTSVIQAERPDSTAGTSSAGTRKLFIGPSSSFVALGKASLIVSPLTHRDGNYVGEYRLKVKPYFFKSEKGSLLLAASDDAVRKLQTG
Ga0207596_102460Ga0207596_1024601F008973RGVFAVFFVLTWLTGLSLAAAFASAAYGFGRMSEPERTDLISLAIFGAIGLLSQAGLLLAPWAVTRGTTPRTIAALLMGPSGVFLSIFAYEGFTRYAAGAPIWVVAWAAYVCGVFVYAAVYVALARGRLGRRPGE
Ga0207596_102461Ga0207596_1024611F067220GCIVPSAETGASTLLLETMFMKNDVHWFKWNAGKKDYEVVLDQGDQKKRAIETLDFLNELHKFSPEASTYNWGELMSTYFSEKAASSYYVGSRLLDQTIANNPKIADATLPFELPRKLTDSYYLSIQGFHVLDKSNVEGAKKYVTFFMKHPDVISWYHAVPLHIIPASRDMLHSAKYQDNPVIQKRMDVLKFLDSVWTKGVPLYYWDGRELNPYIGLYHNENLAGWMLAMRNIKGMKSDQIVDEAAAQVRKKMK
Ga0207596_102579Ga0207596_1025792F033787LGCALAGVIASSLPAAADWHKPYIYRESNGSWTNVRYDDGVCNYYFSRNSYDNNMHLNKYGDCSHVAIGPDGMARPVYLTPTPYGAVETYGSSLE
Ga0207596_102595Ga0207596_1025951F006812MYVLLIILLVVLPFGTAIVCGALMQWAGNTISGWSSIGGLALGIYFFHKCMEVLAV
Ga0207596_102683Ga0207596_1026831F101509MSSGDKYLEMALDLLARAASETNAVRRAGLEALAESYTHMGEQANGHTIDRARSPAS
Ga0207596_102911Ga0207596_1029112F036876TWTYRAYNPERKIWEMQGINTNVGAWQPGLMWTAGESRLLTEWYGPMLVRFRYFAIQPDKFLWRADATFDRGKSWIADYWTMEVHRISR
Ga0207596_103049Ga0207596_1030492F063850MRLVAVIGVVVLVALPGMANAASVEQVFQEFGLFGMWATDCSSPATPGNPHVNITAPSAGLVLEDHDLGPDFAVNRYSVLSAEPVSQTNVSVQMIFQPGTTVEERQKLVFSVNNNTRRTIFNQSDAGAIRVKDGIAMAR
Ga0207596_103215Ga0207596_1032151F017166SRRSARARGSGVNKIMFIVALGAMLFIGWLYLGEMSDVRSIKAAVTAAADSTAVALSQSANPERNTDADADGIFIKHIQTSSTLEDVSVKQSVEPISAGRLRQSVKVTARARTTLSEFFNMQGAEIDITATHDFDRKK
Ga0207596_103234Ga0207596_1032342F051003LPSDVPLAIEAPVRAMAHLPALERAQRAYQALSALLGA
Ga0207596_103382Ga0207596_1033822F067256MKTARYRTVVREFEHTERVIEKKHRIEVLGALLEMHQQQHEPDDEYIKGLRERLKGAQKQLGNMWP
Ga0207596_103562Ga0207596_1035621F024907MNAAVATRSKQIASFRTRLFTAIMIIVATLTALGFYLAQRRVTADAERNLQQTFQTELSSMHKIEELRH
Ga0207596_103563Ga0207596_1035631F006565VVAAALMISRSSLYYRKKPRGSRADRNWDERIVQACGEKPAYGYRRVTWWLRRKEGL
Ga0207596_103576Ga0207596_1035761F071393AALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAASSERFKVVAAMQGEQRRQRSAFNQQKSMLEIRLQEKEALAATQAATIKQLEGVRDELDKRFRVIEALLTSEREAAERKTRRTADGPPAAAG
Ga0207596_103741Ga0207596_1037412F011852IYISNRIEPLGSPVPTSQIVGIAKPFKPEPERSPYIITGSNFAAAYRPASARAAAEPKPTRRTASLQQQQPATDTEARRVPRWKQIAQNPIAALMSIH
Ga0207596_103830Ga0207596_1038302F017166VMVFTGWLYLGEKDAVRSTKADVAAAADRTAVALSQSADPERNTDADAEDVFKKHVPTPSALEDLVVKQSVESISAGRLRQSVKISARARTTLSEFFSMQGAEIEITATHDFDRKK
Ga0207596_104329Ga0207596_1043291F065229MLLIRFAISIFALTLLGLAISLSVAQSEQETNAARAA
Ga0207596_104422Ga0207596_1044221F025086GNTQPKVRFPTSALLLRKNIEALRQKKRPIYLTMEAGAFTRWASAIARPLVERLIICEPRHNRLINSNPTKSDEADVEGMCLLLRLGKLKEVWMGTDRTREIYRALVYELLNWRDAQRELKALIKARYRGWGVLRLHGIRVFSAKGRQEYLAQLPAEEERRMMRRLYGQLDHALKQWKETLQEVQRVGGKFWEVEQ
Ga0207596_104497Ga0207596_1044972F003395GVTASTEMLAAKRHAGVHTPVIGCKMIIANQQMAYAA
Ga0207596_104730Ga0207596_1047301F006477MTVLNLLIVIVASGLAFVAYKHPGAYRVMFIFAFPVLVMGGLLVLAIKIGDLNGSIKSIYHELPNIQKYALSDQLPYQIRRLYDVGQFLKVFLIYYISGFAYLVFLLFLGGLLDLAGLSKYTEHKGDSKEP
Ga0207596_104851Ga0207596_1048512F002103MSTDEPFRTDYELLKGVDYIFVSLDRNLSGEECHELAKKYFETHKGMTLPGQVLRVDLRPAFRKPLADVTPKFRAVSIGYTFTPQR
Ga0207596_105077Ga0207596_1050771F000268MLMRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMIFPDSFDQ
Ga0207596_105082Ga0207596_1050821F034121MRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISR
Ga0207596_105618Ga0207596_1056181F081911RVGNTGYIENPNQYAGSVINNTSAGLYNTQSALPGPWTLPFKSNPWIGY
Ga0207596_106499Ga0207596_1064992F017314VIASKGGASETLNTLFTGKAGGTVTVRRTLASTICRIVDPTQVPRLRQLRDASTVMRFRPAHQSVINRRFNDRASCLARNSLKQPLARKPRIHAPATWN
Ga0207596_106524Ga0207596_1065241F080278MTMPKMTPPHHRYANRTPWPEASREVPAAWLEEEARCSTSPYSLLASWKGSRGGVPSHVMLKMLRRRLREHAPDAPRTAAPPARLQRAQDLLAEIWARSGPAGEKHPSWRLVEGLLRMALDRATPVPAAPDHVQPAHAER
Ga0207596_106588Ga0207596_1065882F029379QVVDRRRGAERRSTLDRRGRASRPLNAERPVEHVRNALQLLREIAVTGELSTGPSEDLGAAIERLYRAVALLEHQPRR

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