| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026765 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072052 | Ga0207590 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-11 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 12040499 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018801 | Metagenome / Metatranscriptome | 233 | Y |
| F020078 | Metagenome / Metatranscriptome | 226 | Y |
| F020986 | Metagenome / Metatranscriptome | 221 | Y |
| F021340 | Metagenome | 219 | Y |
| F041834 | Metagenome | 159 | Y |
| F057508 | Metagenome | 136 | Y |
| F064778 | Metagenome / Metatranscriptome | 128 | Y |
| F072495 | Metagenome | 121 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207590_100530 | All Organisms → cellular organisms → Bacteria | 731 | Open in IMG/M |
| Ga0207590_100641 | All Organisms → cellular organisms → Archaea | 697 | Open in IMG/M |
| Ga0207590_101342 | Not Available | 568 | Open in IMG/M |
| Ga0207590_101358 | Not Available | 567 | Open in IMG/M |
| Ga0207590_101470 | Not Available | 555 | Open in IMG/M |
| Ga0207590_101931 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 514 | Open in IMG/M |
| Ga0207590_101981 | Not Available | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207590_100530 | Ga0207590_1005301 | F021340 | KRHSKLQTFQAHRTIARANVARSQFWHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLRDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQEKPATFTWG |
| Ga0207590_100641 | Ga0207590_1006412 | F041834 | YSTLNKDTIVGEVLNNFSYPIELVRITATVYDKNGIIVATGDKYVNDYLIKPGNRSGFDIFLDETLPSKSKYALTTSFEKSEDDKPEALQLSVGKNSKSSNTFRVLGEVMNQGKNDANAVKVSAIFYDEKHKVTYTDYVFTNPDIISPNKKAPFEFSFYVDNPEKIKSMAFNVQSDEYSLITDNGQNNTISQQ |
| Ga0207590_101342 | Ga0207590_1013422 | F072495 | SGTKRTAPAFRGKMLANEVERLKPPQYVAFRTMERWVVIPVIARIESREGGRLYGYWFSRFTPEGAFREVPVDYVVDLGSDDDAEKLVDLIRGGRELPVEFVQRLHVID |
| Ga0207590_101347 | Ga0207590_1013472 | F057508 | KQTWMNAPHMSAFGGKADMTICGMSAFAVAIGGKADMPFCAAHVCF |
| Ga0207590_101358 | Ga0207590_1013581 | F020078 | MHSATRFCWQSGVIALATIIFAFLVPGIALCKVVSLTSIASAIAITTLVAGFGLYLAGQLIEKRTPQSERVDHYLQASILVTAAGLLWGHVVLQTGPWRDRSIEPGVAFAIVAGCGVAGALLLIRRARR |
| Ga0207590_101470 | Ga0207590_1014702 | F064778 | MEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITN |
| Ga0207590_101931 | Ga0207590_1019312 | F018801 | FIALGVFLKPYALENSRCIGFAGLGPYCFEQASSMPEVIKYGSVAVGFAFLYGGRLQIKRRRNGR |
| Ga0207590_101981 | Ga0207590_1019811 | F020986 | MKTRAIATELDRAFAAARVKGRMGGVVLCDTIAPLYAIHKALKATHASGELTDQQYTEKGRELLEILGNAVVSLLIQQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |