NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026758

3300026758: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026758 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0091553 | Ga0207559
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22752531
Sequencing Scaffolds30
Novel Protein Genes31
Associated Families31

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium10
Not Available8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Croceitalea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003059Metagenome / Metatranscriptome510Y
F003222Metagenome499Y
F004455Metagenome / Metatranscriptome437Y
F009969Metagenome / Metatranscriptome310Y
F013520Metagenome / Metatranscriptome270Y
F014308Metagenome / Metatranscriptome264Y
F015356Metagenome / Metatranscriptome255Y
F021725Metagenome / Metatranscriptome217N
F021765Metagenome / Metatranscriptome217Y
F029099Metagenome / Metatranscriptome189N
F041378Metagenome / Metatranscriptome160Y
F042196Metagenome / Metatranscriptome158Y
F042319Metagenome / Metatranscriptome158Y
F042967Metagenome / Metatranscriptome157Y
F045731Metagenome / Metatranscriptome152N
F046653Metagenome151N
F048404Metagenome / Metatranscriptome148Y
F048418Metagenome / Metatranscriptome148Y
F054170Metagenome140Y
F061363Metagenome / Metatranscriptome132N
F063910Metagenome / Metatranscriptome129N
F073508Metagenome / Metatranscriptome120Y
F076245Metagenome / Metatranscriptome118Y
F081534Metagenome / Metatranscriptome114N
F082512Metagenome113Y
F082905Metagenome / Metatranscriptome113N
F088152Metagenome / Metatranscriptome109Y
F093441Metagenome / Metatranscriptome106Y
F099400Metagenome / Metatranscriptome103Y
F099534Metagenome103Y
F104058Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207559_100127All Organisms → cellular organisms → Bacteria1906Open in IMG/M
Ga0207559_100337All Organisms → cellular organisms → Bacteria → Terrabacteria group1483Open in IMG/M
Ga0207559_100564All Organisms → cellular organisms → Bacteria1235Open in IMG/M
Ga0207559_100633All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1178Open in IMG/M
Ga0207559_100980All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium999Open in IMG/M
Ga0207559_101029All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium977Open in IMG/M
Ga0207559_101112Not Available946Open in IMG/M
Ga0207559_101132Not Available937Open in IMG/M
Ga0207559_101315All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Croceitalea882Open in IMG/M
Ga0207559_101320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium881Open in IMG/M
Ga0207559_101487All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei844Open in IMG/M
Ga0207559_101499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium842Open in IMG/M
Ga0207559_101745All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium793Open in IMG/M
Ga0207559_102225Not Available728Open in IMG/M
Ga0207559_102358All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales713Open in IMG/M
Ga0207559_102377All Organisms → cellular organisms → Bacteria711Open in IMG/M
Ga0207559_102590All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium687Open in IMG/M
Ga0207559_102708Not Available675Open in IMG/M
Ga0207559_103027All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium643Open in IMG/M
Ga0207559_103221Not Available628Open in IMG/M
Ga0207559_103348Not Available617Open in IMG/M
Ga0207559_103696All Organisms → cellular organisms → Bacteria595Open in IMG/M
Ga0207559_103723All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium593Open in IMG/M
Ga0207559_104370All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis557Open in IMG/M
Ga0207559_104870All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium533Open in IMG/M
Ga0207559_104940All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium530Open in IMG/M
Ga0207559_105065All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium525Open in IMG/M
Ga0207559_105098Not Available524Open in IMG/M
Ga0207559_105136Not Available522Open in IMG/M
Ga0207559_105384All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207559_100127Ga0207559_1001272F093441MSIIERSASPQAPVAGSKPRGGRLRVITAGSVGNMEARLGTSGFDVVAVAETEQALIDAVSADEADAIVVEADLCDSLERVRDLAPNALLIVIGDHTPAGALGRIEPGVSGTVMAGLLHALVAEGVGGAVGWGLVPALGPRGMLQVPQRISGWLLSAKADLVREYVANAFRDHAELLTAASTVAVTVSASLVLTLSAAQTHERPHERSERVHAPAP
Ga0207559_100337Ga0207559_1003372F009969MDGILVQTTRSIRALIGVATEGAPADEIDLAYHALLDQCAAAEREALRTPPDPVARFDARAAAVLSVAYRPVLDVLCSGRSLRSEDVELAQKSSGWLNLAYEALLDGDHDTVERCLEMACAFVAADEDTRDAAPPA
Ga0207559_100564Ga0207559_1005643F073508MFIGQVEETGVIEPLVFPRALPADEPVTPQTEPDE
Ga0207559_100633Ga0207559_1006331F042196RRIVDRVASLRSVDNPAMSSREERMALNEAASRRINEGIEQAHKGDPPGRRMTITCECALKSCDRLIEITTPEYQEVRSDATQFAIVPEHLIGDIERIVFENDRFVIVAKRAGTPADVATETDPRS
Ga0207559_100980Ga0207559_1009803F021725GPGTRGGQVMLRAPDGIVPLVGYREWSIRTESDGLSPRLLSLFHPTTWPHDRPFSAVCLRPITWPERVTPRVHEGVPDESCQCGIYAFRRPEFESLNGAAGPKVRGIVFGWGRYVLGTLGWRTQFARLVALLEPGDDPGPVGELAERYRVEVIPHLERIAFLAGRPAT
Ga0207559_101029Ga0207559_1010293F004455NYRPAQTPSARCQECKYMWPKLSVGGCRYVRGVVHADDVCDEFAPERPRP
Ga0207559_101112Ga0207559_1011121F076245MNRLMRPTLLAFVVSLVVWGLVAVWDADPSAVSSWMLTWQRIAVDVAVVSGLVMLARL
Ga0207559_101132Ga0207559_1011322F088152MILSCCQIHRGCTIEVFFGEKAGGRIPWPDPDLKPDAERDFPGLVPNHLEHVLKEPNVKARERIGALTAEVADLREENKKLLDQLVAAGFRNDELAQALQEVPPILRR
Ga0207559_101315Ga0207559_1013151F041378MPRRTSIPRKTKYEVVPANRITARFSAKLMKGGKQNLAD
Ga0207559_101320Ga0207559_1013202F015356VNATEELGQLLGSLGVAVERGADQSRAFLVSPAGRRVRSIAAGGLLLGTPMILRHPFFRTPLGRAIEIGGAAALIAKGAAIIRDWEPAPGPVAPGSGSPA
Ga0207559_101487Ga0207559_1014872F003222MRHDIESCDQGGEDQDKTWLDGPVASVKGKSEALERWTAWR
Ga0207559_101499Ga0207559_1014991F045731AAFLANALVLSDADAVFDLSRRVSMDCADLERDLFPQCDHEDTLDGYVVGDHQGHLFVNGPADYRRTLGFFVEAVDPDYSDELGGAQMQILGVSTCGKGADTSYHLVYLVGLGDPNSTLPADRFLGTYELTKVDGDWAIGATYVGLYTDWQLVLDDPLSQIACGDIQPWIGAAPNLNPPQSESQPTPIPGTSST
Ga0207559_101745Ga0207559_1017452F082905IASDAVDIAALEALLDQAGFVGGTQRQFSRVHGGRRRILARVLTFETPEGASAYVAWLRDHGDEVIGRATPSASLQVPRHGVVLVHEPNPCCHNETRMFLAMWHQGSTVVTIEIAGEGARETDIPELLSQLDAAV
Ga0207559_102225Ga0207559_1022252F099400MRILIWIVGLLALGTSLDSSLYGGAYTRAFVTTIQDMH
Ga0207559_102358Ga0207559_1023582F014308MSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMGKIVDKIA
Ga0207559_102377Ga0207559_1023772F082512MNHEQDVATLIELLKMAAERWPRSEADQASQSELFHEDHSLLEMWPEACRRTGV
Ga0207559_102590Ga0207559_1025901F021765SSRSVRARMRDVEPDTDDRAAGPFGSRFVGVGIGLATFAVFVMLPFLIPITFYVFANVYAAIKGTTFSSDTANSGVVLTLLVVSVVLFPVGLAAGIAFLGRALSPKRRRA
Ga0207559_102708Ga0207559_1027082F013520MHPAETYRRRAERAERACENARTPDAKRLARTAAQRWRELAELAERREAEGPPIPIRFGDASEAVNYAQDHKFALYWKGTHAFAKRQRELGDRFVARPVFTRKGS
Ga0207559_102827Ga0207559_1028271F081534MRRAFALFGLSATLAVAWISMLPSQALATVTGPCTVSIDGADVTNGHGVPGSAVPLQSGSQVSVDGTAQSRVTDLNYTVHIAGGGVQVGTVTIAQDGLSWSGTVDLESISNATVGLFEVTAEVQTTGQDCSGVAYVCIEGRSP
Ga0207559_103027Ga0207559_1030271F029099FYQTELGKTLRIDETDEGAISVDILKDGVWSEAPRGMIGLRLSPGARTLTATEILALPA
Ga0207559_103221Ga0207559_1032212F099534LGRYGTGIGMTDVAAMMKAIEAMHTCHVEFVVRTAGKGVDGSMLIGCVATFDTLPGSDLPKRVDVEHTWPSKAARTFDGLCYNLLWQLDYAIQKAYEQL
Ga0207559_103348Ga0207559_1033481F048404VEERATEAQSQRGVGTENPSQARMHRRLGTRLPLGGLLGAIAGAMVGTLVGFLFFDRSAAVLTSILASAVFGLGVGMLVAGYSSLESPDPGAEPSDTARPVADRPEVVREERPDPPVPNQMPED
Ga0207559_103696Ga0207559_1036962F054170MNVTIGFQETEEILSWDVSDEALELAGTAGQEIAGAYTLQFCTSQDCALVS
Ga0207559_103723Ga0207559_1037232F042967MDGSRLLTTIGLIRQARPGGFCPACRVLMKARDAGQELARPLVAALVVLAV
Ga0207559_104370Ga0207559_1043702F048418ARVKAVPARRQAAINSIDWLGLWALSLGFCAIVLAGIAYFTIGDNIGASSILMGAAAIIAVIVRFGADRDQARDGN
Ga0207559_104870Ga0207559_1048701F003059MLAGAAIVMAAMPAAAQVRDAVYRGTLICDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK
Ga0207559_104940Ga0207559_1049402F104058EALRQNGDEEQAKLAALDTIADADERVRLKRIGVGRREVTVVLVVHADTLVVGRIPFLDDLGRVTVSGSTAVPRD
Ga0207559_105065Ga0207559_1050651F061363HSGPGLVIPLGFGVAVLVGATFAGAPVARADGGAYLDLDRTHYLPGQTAWFEGYVSIPRAKQDLIERGPFYVFVVPPRTAVTEGQPIPAEAIRAGTASIERDRGSVFELHGSFVVPELAGRTYALSVCNDPCTISGFREPLTGTISIVATAREGELLTEVSRLNGRNWSLRRQV
Ga0207559_105098Ga0207559_1050981F046653KVVGVTPTFTEVYEYAAGVRSESILLPLREDYGQDIGVLVNRVSDGDTNAANDPDKLDWSAFEVSAGIALPDFNDALNAGVDLSITGAAALNVLDGLVVLKVAGFEMQLGKVSGDDGNTTLTDAQALSVTLTDVTLWVGPGGSLSDGGTALDVTDGTTFSDDAVVAGTLGFSGH
Ga0207559_105136Ga0207559_1051361F063910MSERHNLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTPTTTG
Ga0207559_105384Ga0207559_1053841F042319TYQTTTIGIADQSALLSRIAAWCTHFVEGVREGQEIAARYHALSRLSTPELARRGLNRQTIARAALTSY
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