| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026749 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091547 | Ga0207452 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07K1-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21600752 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 2 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003059 | Metagenome / Metatranscriptome | 510 | Y |
| F023865 | Metagenome / Metatranscriptome | 208 | Y |
| F025522 | Metagenome / Metatranscriptome | 201 | Y |
| F027009 | Metagenome / Metatranscriptome | 196 | Y |
| F045778 | Metagenome / Metatranscriptome | 152 | Y |
| F054450 | Metagenome / Metatranscriptome | 140 | Y |
| F055942 | Metagenome / Metatranscriptome | 138 | Y |
| F061030 | Metagenome / Metatranscriptome | 132 | Y |
| F068970 | Metagenome | 124 | N |
| F103537 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207452_100056 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota | 1274 | Open in IMG/M |
| Ga0207452_101542 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 619 | Open in IMG/M |
| Ga0207452_101578 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 615 | Open in IMG/M |
| Ga0207452_101972 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 582 | Open in IMG/M |
| Ga0207452_102170 | All Organisms → cellular organisms → Archaea | 569 | Open in IMG/M |
| Ga0207452_103016 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 522 | Open in IMG/M |
| Ga0207452_103282 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 511 | Open in IMG/M |
| Ga0207452_103526 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207452_100056 | Ga0207452_1000562 | F027009 | MVASKMEADIIAEYFKKSKQNLQSEHDSMIQDLKQDISSYKKKALSDV |
| Ga0207452_101542 | Ga0207452_1015421 | F061030 | IPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK |
| Ga0207452_101578 | Ga0207452_1015781 | F055942 | PVDARYLAGQGGVRLVIACNHKSAILLELLDHGIGDQDFDARHQRAILERGHRNAVNVPEIVRLYRPDVISKATGDREAKDCRK |
| Ga0207452_101972 | Ga0207452_1019721 | F023865 | DVDPGATPAGLAQVRFLDQLYNGQIERAYASLHPAYQRVVPRSRFVECTRRGALGGLDSIEVLDVYDDPVQIPGGGKAGAKAVRVRLTSSDGQATTFVNHEVKVGPRWRWVLNDAALKAFQAGKCPST |
| Ga0207452_101972 | Ga0207452_1019722 | F025522 | MSTAQTYEVKCPHCKKSFKAELLGGGERTGFKCPHCRLFVPYERAATEQAR |
| Ga0207452_102039 | Ga0207452_1020392 | F103537 | VFAFAAIEYEFLLTVSGQIKHELLKMNEAKFIDIVQWRYTEVAQQAAKFVTLNKAFINCFKIIHKLSQQIFNIILATKFSR |
| Ga0207452_102170 | Ga0207452_1021702 | F054450 | FFNGNNPHSNKHRPTPTLRPVNISKEQLRDFRKLLSDPRTSQKIKKRFMLEKASGYCSVW |
| Ga0207452_103016 | Ga0207452_1030161 | F003059 | AIVMAAMPAAAQVRDAVYRGTLICDKLPFSAGKGREAIEVTIAGGTVRYSHVVRLRDAAEPVSEQGKGSLNGQDIELQGSWKAGNRQYEAKYSGAFVRRHADLKGTQTWTDGGKSFTRACTGTIKRPFRVFLPGEKK |
| Ga0207452_103282 | Ga0207452_1032822 | F045778 | MPLARVVTFEGVDRARIDQLREQIETGEQPEGLNATEIIVLHDGGADKSLTVVFFDNEDDYVRGNEILDSMPRDDTPGERTSVSKYDVAIRMAD |
| Ga0207452_103526 | Ga0207452_1035261 | F068970 | NIPAFGKYFEDIKVYSDVYTGGGNSSKPINQFDPVNKEIYVGQTIKWSNPTAGAPYPHIVVFVSNQSAELESKISNITKPLHSSNGQSVVGNLNKLLIEDNNHNNKSNQTFSARSIVLPSIINTSSLAVKYLNVNGSGIYSGAGYNFTGNERYVSSGLIWAGGVIP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |